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From "Chathuri Wimalasena (JIRA)" <j...@apache.org>
Subject [jira] [Created] (AIRAVATA-1674) SSH authentication issue when submitting to trestles
Date Wed, 15 Apr 2015 17:53:59 GMT
Chathuri Wimalasena created AIRAVATA-1674:
---------------------------------------------

             Summary: SSH authentication issue when submitting to trestles
                 Key: AIRAVATA-1674
                 URL: https://issues.apache.org/jira/browse/AIRAVATA-1674
             Project: Airavata
          Issue Type: Improvement
    Affects Versions: 0.14
            Reporter: Chathuri Wimalasena
             Fix For: 0.15 


org.apache.airavata.gfac.GFacException: Error invoking ZK
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:940)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:715)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:495)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:209)
	at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:51)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:930)
	... 7 more
Caused by: org.apache.airavata.gfac.GFacException: Error occurred...
	at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:181)
	at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:45)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:926)
	... 7 more
Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: An exception occurred while connecting
to server.Connecting server - trestles.sdsc.xsede.org:22 connecting user name - ogce
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:235)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:100)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:94)
	at org.apache.airavata.gsi.ssh.impl.PBSCluster.<init>(PBSCluster.java:44)
	at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:169)
	... 9 more
Caused by: java.lang.NumberFormatException: For input string: "18e8:2:102::6"
	at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
	at java.lang.Integer.parseInt(Integer.java:580)
	at java.lang.Integer.parseInt(Integer.java:615)
	at com.sun.jndi.dns.DnsClient.<init>(DnsClient.java:127)
	at com.sun.jndi.dns.Resolver.<init>(Resolver.java:61)
	at com.sun.jndi.dns.DnsContext.getResolver(DnsContext.java:573)
	at com.sun.jndi.dns.DnsContext.c_getAttributes(DnsContext.java:434)
	at com.sun.jndi.toolkit.ctx.ComponentDirContext.p_getAttributes(ComponentDirContext.java:235)
	at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:141)
	at com.sun.jndi.toolkit.url.GenericURLDirContext.getAttributes(GenericURLDirContext.java:103)
	at sun.security.krb5.KrbServiceLocator.getKerberosService(KrbServiceLocator.java:85)
	at sun.security.krb5.Config.checkRealm(Config.java:1120)
	at sun.security.krb5.Config.getRealmFromDNS(Config.java:1093)
	at sun.security.krb5.Config.getDefaultRealm(Config.java:987)
	at sun.security.krb5.Realm.getDefault(Realm.java:58)
	at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:451)
	at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:460)
	at sun.security.jgss.krb5.Krb5NameElement.getInstance(Krb5NameElement.java:92)
	at sun.security.jgss.krb5.Krb5MechFactory.getNameElement(Krb5MechFactory.java:95)
	at sun.security.jgss.GSSManagerImpl.getNameElement(GSSManagerImpl.java:203)
	at sun.security.jgss.GSSNameImpl.getElement(GSSNameImpl.java:477)
	at sun.security.jgss.GSSNameImpl.init(GSSNameImpl.java:201)
	at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:170)
	at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:151)
	at sun.security.jgss.GSSManagerImpl.createName(GSSManagerImpl.java:128)
	at com.jcraft.jsch.jgss.GSSContextKrb5.create(GSSContextKrb5.java:80)
	at com.jcraft.jsch.UserAuthGSSAPIWithMIC.start(UserAuthGSSAPIWithMIC.java:125)
	at com.jcraft.jsch.Session.connect(Session.java:463)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:230)
	... 13 more
[ERROR] Error inovoking the job with experiment ID: AmberExperiment_74d527f6-d6dd-4c05-8300-ebd816ccbfb6
[ERROR] Error invoking ZK
org.apache.airavata.gfac.GFacException: Error invoking ZK
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:770)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:495)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:209)
	at org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:51)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
	at java.lang.Thread.run(Thread.java:745)
Caused by: org.apache.airavata.gfac.GFacException: Error invoking ZK
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:940)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:715)
	... 6 more
Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:930)
	... 7 more
Caused by: org.apache.airavata.gfac.GFacException: Error occurred...
	at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:181)
	at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:45)
	at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:926)
	... 7 more
Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: An exception occurred while connecting
to server.Connecting server - trestles.sdsc.xsede.org:22 connecting user name - ogce
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:235)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:100)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.<init>(GSISSHAbstractCluster.java:94)
	at org.apache.airavata.gsi.ssh.impl.PBSCluster.<init>(PBSCluster.java:44)
	at org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:169)
	... 9 more
Caused by: java.lang.NumberFormatException: For input string: "18e8:2:102::6"
	at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
	at java.lang.Integer.parseInt(Integer.java:580)
	at java.lang.Integer.parseInt(Integer.java:615)
	at com.sun.jndi.dns.DnsClient.<init>(DnsClient.java:127)
	at com.sun.jndi.dns.Resolver.<init>(Resolver.java:61)
	at com.sun.jndi.dns.DnsContext.getResolver(DnsContext.java:573)
	at com.sun.jndi.dns.DnsContext.c_getAttributes(DnsContext.java:434)
	at com.sun.jndi.toolkit.ctx.ComponentDirContext.p_getAttributes(ComponentDirContext.java:235)
	at com.sun.jndi.toolkit.ctx.PartialCompositeDirContext.getAttributes(PartialCompositeDirContext.java:141)
	at com.sun.jndi.toolkit.url.GenericURLDirContext.getAttributes(GenericURLDirContext.java:103)
	at sun.security.krb5.KrbServiceLocator.getKerberosService(KrbServiceLocator.java:85)
	at sun.security.krb5.Config.checkRealm(Config.java:1120)
	at sun.security.krb5.Config.getRealmFromDNS(Config.java:1093)
	at sun.security.krb5.Config.getDefaultRealm(Config.java:987)
	at sun.security.krb5.Realm.getDefault(Realm.java:58)
	at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:451)
	at sun.security.krb5.PrincipalName.<init>(PrincipalName.java:460)
	at sun.security.jgss.krb5.Krb5NameElement.getInstance(Krb5NameElement.java:92)
	at sun.security.jgss.krb5.Krb5MechFactory.getNameElement(Krb5MechFactory.java:95)
	at sun.security.jgss.GSSManagerImpl.getNameElement(GSSManagerImpl.java:203)
	at sun.security.jgss.GSSNameImpl.getElement(GSSNameImpl.java:477)
	at sun.security.jgss.GSSNameImpl.init(GSSNameImpl.java:201)
	at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:170)
	at sun.security.jgss.GSSNameImpl.<init>(GSSNameImpl.java:151)
	at sun.security.jgss.GSSManagerImpl.createName(GSSManagerImpl.java:128)
	at com.jcraft.jsch.jgss.GSSContextKrb5.create(GSSContextKrb5.java:80)
	at com.jcraft.jsch.UserAuthGSSAPIWithMIC.start(UserAuthGSSAPIWithMIC.java:125)
	at com.jcraft.jsch.Session.connect(Session.java:463)
	at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:230)
	... 13 more



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