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From "Eroma (JIRA)" <j...@apache.org>
Subject [jira] [Created] (AIRAVATA-1712) Experiments on BR2 fails during creating scratch directory in w111
Date Thu, 04 Jun 2015 09:08:38 GMT
Eroma created AIRAVATA-1712:
-------------------------------

             Summary: Experiments on BR2 fails during creating scratch directory in w111
                 Key: AIRAVATA-1712
                 URL: https://issues.apache.org/jira/browse/AIRAVATA-1712
             Project: Airavata
          Issue Type: Bug
    Affects Versions: 0.16
         Environment: http://dev.test-drive.airavata.org/portal/pga/public/
            Reporter: Eroma


Created and launched multiple experiments (Amber_Sander, Echo and AutoDock) on BR2.
Experiment failed with exp state = FAILED and No job status.

Error message displayed in PGA
org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during creating directory :/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4
to remote file bigred2.uits.iu.edu:rFile at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635) at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148) at
org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException:
mkdir: cannot create directory `/N/dc2/scratch': Permission denied at org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554)
... 10 more org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing
a InFlow Handler org.apache.airavata.gfac.GFacException: Error launching the Job at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:450)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:148) at
org.apache.airavata.gfac.core.utils.InputHandlerWorker.run(InputHandlerWorker.java:47) at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745) Caused by: org.apache.airavata.gfac.GFacException:
Error Invoking Handlers:Error Executing a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:692)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:437) ...
5 more Caused by: org.apache.airavata.gfac.GFacException: Error Invoking Handlers:Error Executing
a InFlow Handler at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:859)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:635) ... 6
more Caused by: org.apache.airavata.gfac.GFacException: Error Executing a InFlow Handler at
org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:848)
... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: Failed during creating
directory :/N/dc2/scratch/cgateway/gta-work-dirs/ECHO_BR21_38839719-5068-4e5d-b1d3-05eaf73efdc4
to remote file bigred2.uits.iu.edu:rFile at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:581)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.makeDirectory(SSHDirectorySetupHandler.java:83)
at org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:63)
at org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:844)
... 7 more Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: mkdir: cannot create
directory `/N/dc2/scratch': Permission denied at org.apache.airavata.gsi.ssh.util.SSHUtils.makeDirectory(SSHUtils.java:698)
at org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.makeDirectory(GSISSHAbstractCluster.java:554)
... 10 



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