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From "Eroma (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (AIRAVATA-2339) Default ssh key use for individual user accounts failing. Cannot ssh to compute resource
Date Fri, 24 Mar 2017 14:16:41 GMT

    [ https://issues.apache.org/jira/browse/AIRAVATA-2339?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15940423#comment-15940423
] 

Eroma commented on AIRAVATA-2339:
---------------------------------

[~marcuschristie] Now the environment set up is working but failing at data staging with below
error messages in the log and pga
PGA error:
org.apache.airavata.gfac.core.GFacException: Error: userFriendly msg :Error while executing
DATA_STAGING task, actual msg :expId: Guassian_1_e33c6be3-6248-49b8-9a17-c9cea15b0782, processId:
PROCESS_06b7c0b6-044b-47f2-a7a3-a28a6fc34f1c, taskId: TASK_ccb1a489-a6f1-4bf8-a20d-3fa7ef144ac3,
type: DATA_STAGING :- DATA_STAGING failed. Reason: Data staging failed at org.apache.airavata.gfac.impl.GFacEngineImpl.checkFailures(GFacEngineImpl.java:630)
at org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:611)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:349)
at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:288) at
org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:229) at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:88)
at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:21) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)

Log error:
2017-03-24 09:54:01 [pool-7-thread-4] INFO o.a.a.gfac.impl.HPCRemoteCluster - Transferring
from:/var/www/portals/gateway-user-data/dev-seagrid/Dev1Eroma2017/March_24_Experiments/Clone_of_Guassian_11490363611/Gaussian.com
To: /N/dc2/scratch/eabeysin/work-dirs/PROCESS_eacc1501-f171-4ed3-aa69-c17d68a62104/
2017-03-24 09:54:01 [pool-7-thread-4] INFO o.apache.airavata.gfac.impl.Factory - Session validation
failed, key :pga_gw54.iu.xsede.org_22_6056d38e-0aeb-4ec6-9bc0-0c10a7bf794b
2017-03-24 09:54:01 [pool-7-thread-4] INFO o.apache.airavata.gfac.impl.Factory - Initialize
a new SSH session for :pga_gw54.iu.xsede.org_22_6056d38e-0aeb-4ec6-9bc0-0c10a7bf794b
2017-03-24 09:54:01 [pool-7-thread-4] ERROR o.a.a.gfac.core.GFacException - JSch initialization
error
com.jcraft.jsch.JSchException: Auth cancel
        at com.jcraft.jsch.Session.connect(Session.java:511)
        at com.jcraft.jsch.Session.connect(Session.java:183)
        at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:543)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:275)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.scpThirdParty(HPCRemoteCluster.java:174)
        at org.apache.airavata.gfac.impl.task.SCPDataStageTask.inputDataStaging(SCPDataStageTask.java:248)
        at org.apache.airavata.gfac.impl.task.SCPDataStageTask.execute(SCPDataStageTask.java:159)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:816)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:606)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:349)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:288)
        at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:229)
        at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:88)
        at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:21)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
        at java.lang.Thread.run(Thread.java:745)
2017-03-24 09:54:01 [pool-7-thread-4] ERROR o.a.a.g.impl.task.SCPDataStageTask - Data staging
failed
org.apache.airavata.gfac.core.GFacException: JSch initialization error
        at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:546)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:275)
        at org.apache.airavata.gfac.impl.HPCRemoteCluster.scpThirdParty(HPCRemoteCluster.java:174)
        at org.apache.airavata.gfac.impl.task.SCPDataStageTask.inputDataStaging(SCPDataStageTask.java:248)
        at org.apache.airavata.gfac.impl.task.SCPDataStageTask.execute(SCPDataStageTask.java:159)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:816)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.inputDataStaging(GFacEngineImpl.java:606)
        at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:349)


> Default ssh key use for individual user accounts failing. Cannot ssh to compute resource
> ----------------------------------------------------------------------------------------
>
>                 Key: AIRAVATA-2339
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2339
>             Project: Airavata
>          Issue Type: Bug
>          Components: GFac, PGA PHP Web Gateway
>    Affects Versions: 0.17
>            Reporter: Eroma
>            Assignee: Marcus Christie
>             Fix For: 0.17
>
>
> For individual user settings we can assign the default generated key.
> When it is assigned USER_RESOURCE_PROFILE table gets updated with the relevant token.
> When tried to use it to ssh it is failing.
> But if a new key is generated and assigned then ssh to resource work. When a new key
is generated it get saved in to USER_COMPUTE_RESOURCE_PREFERENCE.



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