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From "ASF GitHub Bot (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (AIRAVATA-2621) SSH port provided in compute resource registration is not considered for cluster SSH communication
Date Thu, 18 Jan 2018 19:31:04 GMT

    [ https://issues.apache.org/jira/browse/AIRAVATA-2621?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16331046#comment-16331046
] 

ASF GitHub Bot commented on AIRAVATA-2621:
------------------------------------------

machristie commented on issue #160: Fixing AIRAVATA-2621
URL: https://github.com/apache/airavata/pull/160#issuecomment-358756007
 
 
   I merged this manually.

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> SSH port provided in compute resource registration is not considered for cluster SSH
communication
> --------------------------------------------------------------------------------------------------
>
>                 Key: AIRAVATA-2621
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2621
>             Project: Airavata
>          Issue Type: Bug
>          Components: GFac
>    Affects Versions: 0.18
>         Environment: https://hpcgateway.gsu.edu/
> https://scigap.org/
>            Reporter: Eroma
>            Assignee: Dimuthu Upeksha
>            Priority: Major
>             Fix For: 0.18
>
>
> 1. Added a specific port for job submissions (15022)
> 2. But when submitting jobs, for environment creation, the gfac is using the default
22 port, not the specified one in scigap.org for hpclogin.gsu.edu.
> 3. log messages in airavata log
> 2017-12-19 11:13:18,996 [pool-7-thread-2] INFO  o.a.airavata.gfac.impl.Factory process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2,
token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7,
gateway_id=georgiastate - Initialize a new SSH session for :airavata_hpclogin.gsu.edu_22_35da840b-63d5-4cbf-b9ce-3005cd94d961
> 2017-12-19 11:15:26,272 [pool-7-thread-2] ERROR o.a.a.gfac.core.GFacException process_id=PROCESS_3b471b3b-5b4e-4b6d-a66e-554652a390d2,
token_id=35da840b-63d5-4cbf-b9ce-3005cd94d961, experiment_id=NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7,
gateway_id=georgiastate - JSch initialization error
> com.jcraft.jsch.JSchException: java.net.ConnectException: Connection timed out (Connection
timed out)
>         at com.jcraft.jsch.Util.createSocket(Util.java:349)
>         at com.jcraft.jsch.Session.connect(Session.java:215)
>         at com.jcraft.jsch.Session.connect(Session.java:183)
>         at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
>         at org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
>         at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
>         at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
>         at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:748)
> Caused by: java.net.ConnectException: Connection timed out (Connection timed out)
>         at java.net.PlainSocketImpl.socketConnect(Native Method)
>         at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
>         at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
>         at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
>         at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
>         at java.net.Socket.connect(Socket.java:589)
>         at java.net.Socket.connect(Socket.java:538)
>         at java.net.Socket.<init>(Socket.java:434)
>         at java.net.Socket.<init>(Socket.java:211)
>         at com.jcraft.jsch.Util.createSocket(Util.java:343)
>         ... 17 common frames omitted
> ?NWChem2_a38ac303-666f-4dea-9b4c-7bffe0f97dd7



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