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From "Dimuthu Upeksha (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (AIRAVATA-2624) Sampede2 cluster SSH connectivity issue
Date Wed, 17 Jan 2018 19:44:00 GMT

    [ https://issues.apache.org/jira/browse/AIRAVATA-2624?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16329304#comment-16329304
] 

Dimuthu Upeksha commented on AIRAVATA-2624:
-------------------------------------------

Fixed in [https://github.com/apache/airavata/commit/dc6ea56eb5435ec3f03d6a8226a44497e7290616]

Added UIKeyboardInteractive feature for DefaultUserInfo class to support 2 factor ssh authentication.

> Sampede2 cluster SSH connectivity issue
> ---------------------------------------
>
>                 Key: AIRAVATA-2624
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2624
>             Project: Airavata
>          Issue Type: Bug
>          Components: Airavata System, GFac
>    Affects Versions: 0.18
>         Environment: https://seagrid.org 
>            Reporter: Eroma
>            Assignee: Suresh Marru
>            Priority: Major
>             Fix For: 0.18
>
>
> Job submission fails at env creation due to JSch initialization error.
> Error messages
> 2018-01-09 09:46:10,786 [pool-7-thread-15] ERROR o.a.a.gfac.core.GFacException process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - JSch initialization error
> com.jcraft.jsch.JSchException: Auth fail
>         at com.jcraft.jsch.Session.connect(Session.java:512)
>         at com.jcraft.jsch.Session.connect(Session.java:183)
>         at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
>         at org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
>         at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
>         at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
>         at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:748)
> 2018-01-09 09:46:10,786 [pool-7-thread-15] ERROR o.a.a.g.i.t.EnvironmentSetupTask process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - Error while environment setup
> org.apache.airavata.gfac.core.GFacException: JSch initialization error
>         at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:545)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSshSession(HPCRemoteCluster.java:138)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.getSession(HPCRemoteCluster.java:315)
>         at org.apache.airavata.gfac.impl.HPCRemoteCluster.makeDirectory(HPCRemoteCluster.java:242)
>         at org.apache.airavata.gfac.impl.task.EnvironmentSetupTask.execute(EnvironmentSetupTask.java:51)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTask(GFacEngineImpl.java:814)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:553)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
>         at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
>         at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
>         at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:748)
> Caused by: com.jcraft.jsch.JSchException: Auth fail
>         at com.jcraft.jsch.Session.connect(Session.java:512)
>         at com.jcraft.jsch.Session.connect(Session.java:183)
>         at org.apache.airavata.gfac.impl.Factory.getSSHSession(Factory.java:542)
>         ... 14 common frames omitted
> 2018-01-09 09:46:10,786 [pool-7-thread-15] INFO  o.a.a.g.c.context.TaskContext process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - expId: Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990, processId:
PROCESS_650014f6-fcb6-4680-90ea-898bee373f37, taskId: TASK_03ea62e9-55c0-4d9f-bfc9-af26c9c45aa0,
type: ENV_SETUP : Task status changed EXECUTING -> FAILED
> 2018-01-09 09:46:10,793 [pool-7-thread-15] ERROR o.a.a.gfac.impl.GFacEngineImpl process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - expId: Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990, processId:
PROCESS_650014f6-fcb6-4680-90ea-898bee373f37, taskId: TASK_03ea62e9-55c0-4d9f-bfc9-af26c9c45aa0
type: ENV_SETUP,:- Input staging failed, reason: Error while environment setup
> 2018-01-09 09:46:10,803 [pool-7-thread-15] ERROR o.a.a.gfac.impl.GFacWorker process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - GFac Worker throws an exception
> org.apache.airavata.gfac.core.GFacException: Error while environment setup
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.configureWorkspace(GFacEngineImpl.java:572)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeTaskListFrom(GFacEngineImpl.java:324)
>         at org.apache.airavata.gfac.impl.GFacEngineImpl.executeProcess(GFacEngineImpl.java:286)
>         at org.apache.airavata.gfac.impl.GFacWorker.executeProcess(GFacWorker.java:227)
>         at org.apache.airavata.gfac.impl.GFacWorker.run(GFacWorker.java:86)
>         at org.apache.airavata.common.logging.MDCUtil.lambda$wrapWithMDC$0(MDCUtil.java:40)
>         at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
>         at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
>         at java.lang.Thread.run(Thread.java:748)
> 2018-01-09 09:46:10,803 [pool-7-thread-15] INFO  o.a.a.g.c.c.ProcessContext process_id=PROCESS_650014f6-fcb6-4680-90ea-898bee373f37,
token_id=3d65bf6d-2c9f-4166-a51b-e76e0022bd3b, experiment_id=Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990,
gateway_id=seagrid - expId: Clone_of_st2molcastest_e2942a34-c9c7-4f04-8ccb-af6fe27e0990, processId:
PROCESS_650014f6-fcb6-4680-90ea-898bee373f37 :- Process status changed CONFIGURING_WORKSPACE
-> FAILE



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