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From "Eroma (JIRA)" <j...@apache.org>
Subject [jira] [Created] (AIRAVATA-2740) Non-existing file transfer has failed the experiment
Date Thu, 05 Apr 2018 19:48:00 GMT
Eroma created AIRAVATA-2740:
-------------------------------

             Summary: Non-existing file transfer has failed the experiment
                 Key: AIRAVATA-2740
                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2740
             Project: Airavata
          Issue Type: Bug
          Components: helix implementation
    Affects Versions: 0.18
         Environment: http://149.165.168.248:8008/
            Reporter: Eroma
            Assignee: Dimuthu Upeksha


# Due to an 0 byte input file upload tan expected output file is not generated in the application
execution. 
 # The airavata tries to transfer the file an error is thrown as the file is not existing.
 # But a 0 byte output file is created in the gateway data storage and user can view it.
 # Exception is thrown [1]
 # If a specified output file is not in the working directory, it should be ignored, not create
an empty file in the storage
 # If a 0 byte file exists in the working directory it should be transferred to the storage.

[1]

org.apache.airavata.agents.api.AgentException: java.io.FileNotFoundException: /tmp/PROCESS_ac1064b1-226e-491c-91e6-303448f05f16/temp_inputs/Gaussian.log
(No such file or directory) at org.apache.airavata.helix.agent.ssh.SshAgentAdaptor.copyFileTo(SshAgentAdaptor.java:307)
at org.apache.airavata.helix.agent.storage.StorageResourceAdaptorImpl.uploadFile(StorageResourceAdaptorImpl.java:98)
at org.apache.airavata.helix.impl.task.staging.DataStagingTask.transferFileToStorage(DataStagingTask.java:158)
at org.apache.airavata.helix.impl.task.staging.OutputDataStagingTask.onRun(OutputDataStagingTask.java:163)
at org.apache.airavata.helix.impl.task.AiravataTask.onRun(AiravataTask.java:265) at org.apache.airavata.helix.core.AbstractTask.run(AbstractTask.java:82)
at org.apache.helix.task.TaskRunner.run(TaskRunner.java:70) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:748) Caused by: java.io.FileNotFoundException: /tmp/PROCESS_ac1064b1-226e-491c-91e6-303448f05f16/temp_inputs/Gaussian.log
(No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195)
at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93)
at org.apache.airavata.helix.agent.ssh.SshAgentAdaptor.copyFileTo(SshAgentAdaptor.java:276)
... 13 more



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