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From "Eroma (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (AIRAVATA-2625) Derive and present Text outputs in Experiment summary
Date Fri, 20 Jul 2018 20:44:00 GMT

    [ https://issues.apache.org/jira/browse/AIRAVATA-2625?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=16551258#comment-16551258
] 

Eroma commented on AIRAVATA-2625:
---------------------------------

Ran the test cases for the new implementation in [http://149.165.168.200:8008|http://149.165.168.200:8008/]
 # Add a filed from an existing output (QauntumEspresso.out) file. The complete line which
start from the added text is derived and displayed in the experiment summary. (e.g.Bravis:
bravais-lattice index = 2.) - PASS
 # Add multiple fields from the same file to be read from the output file. Each text to derive
need to be added as separate outputs in the application interface. Added multiple fields will
be displayed in the experiment summary. – PASS
 # Add multiple fields from different files to read and display in experiment summary. - 
 # Add a text to derive from a single file but it appears in multiple places in the file.
All the lines the particular text appears will be displayed. – PASS
 # Add a text which is in middle of a line as the reading text from one of the input files.
– The complete line which the text belong will be derived and displayed. Not staring from
the text given and forward but the complete line it appears will be displayed. – PASS
 # Add a new application (Gaussian) in to application catalog and launch a job. This job does
not have text outputs defined to be read from files. Job got launched and submitted successfully.
Job completed successfully and all defined outputs transferred to the gateway – PASS
 # Add a text output to be read from defined file (gaussian.log) in the above new application.
Clone the above experiment and submit a new experiment. The new experiment and job completed.
The experiment summary displays the defined text outputs. The give text appears in multiple
times in the file and all those lines are derived and displayed – PASS
 # NOTE: If you want to derive multiple text from single file, provide the text separating
with commas and no spaces.
 # Tested in both PBS and SLURM machines. - PASS
 # Try to read from .tar file. Give a string from a file in the tar. This will not work. In
order to read a direct file need to be provided. No errors, exceptions thrown. Simply no text
will be derived and displayed. Expected behavior. - PASS

> Derive and present Text outputs in Experiment summary
> -----------------------------------------------------
>
>                 Key: AIRAVATA-2625
>                 URL: https://issues.apache.org/jira/browse/AIRAVATA-2625
>             Project: Airavata
>          Issue Type: Bug
>          Components: Airavata System
>    Affects Versions: 0.18
>            Reporter: Eroma
>            Assignee: Dimuthu Upeksha
>            Priority: Major
>
> Currently the available application outputs are in the form of stdout, stderr and URI
(files). Going forward to have text (String, Integer, Float) outputs directly in the experiment
summary.
> These text outputs to be displayed as key+value pairs and when defining should be defined
a file to derive from, e.g. stdout
> At a given time from a single file one or many of these key+value pairs could be derived.
Also gateway admin can define multiple files to derive multiple of these values.
> These would be displayed to user in experiment summary and in detailed experiment summary
in admin dashboard experiment statistics.
> These should also be displayed to any other gateway user it is shared with. 



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