ctakes-commits mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From spmurph...@apache.org
Subject svn commit: r1423509 - in /incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine: Sample_SmokingStatus_output_cda.xml Sample_SmokingStatus_output_flatfile.xml
Date Tue, 18 Dec 2012 16:16:04 GMT
Author: spmurphy50
Date: Tue Dec 18 16:16:03 2012
New Revision: 1423509

URL: http://svn.apache.org/viewvc?rev=1423509&view=rev
Log:
cTAKES 101

Modified:
    incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
    incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml

Modified: incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml?rev=1423509&r1=1423508&r2=1423509&view=diff
==============================================================================
--- incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
(original)
+++ incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_cda.xml
Tue Dec 18 16:16:03 2012
@@ -1,90 +1,69 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
-    <collectionReader>
-        <collectionIterator>
-            <descriptor>
-                <import location="../../coredesc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
-            </descriptor>
-            <configurationParameterSettings>
-                <nameValuePair>
-                    <name>InputDirectory</name>
-                    <value>
-                        <string>testdata/smokingtest/testinput/testcda</string>
-                    </value>
-                </nameValuePair>
-            </configurationParameterSettings>
-        </collectionIterator>
-    </collectionReader>
-    <casProcessors casPoolSize="3" processingUnitThreadCount="1">
-        <casProcessor deployment="integrated" name="SimulatedProdAggregateTAE_CDA">
-            <descriptor>
-                <import location="../analysis_engine/SimulatedProdSmokingTAE_CDA.xml"/>
-            </descriptor>
-            <deploymentParameters/>
-            <errorHandling>
-                <errorRateThreshold action="terminate" value="0/1000"/>
-                <maxConsecutiveRestarts action="terminate" value="30"/>
-                <timeout max="100000" default="-1"/>
-            </errorHandling>
-            <checkpoint batch="10000" time="1000ms"/>
-        </casProcessor>
-        <casProcessor deployment="integrated" name="RecordResolutionCasConsumer">
-            <descriptor>
-                <import location="../cas_consumer/RecordResolutionCasConsumer.xml"/>
-            </descriptor>
-            <deploymentParameters/>
-            <errorHandling>
-                <errorRateThreshold action="terminate" value="0/1000"/>
-                <maxConsecutiveRestarts action="terminate" value="30"/>
-                <timeout max="100000" default="-1"/>
-            </errorHandling>
-            <checkpoint batch="10000" time="1000ms"/>
-            <configurationParameterSettings>
-                <nameValuePair>
-                    <name>OutputFile</name>
-                    <value>
-                        <string>testdata/smokingtest/testoutput/cda/record_resolution.txt</string>
-                    </value>
-                </nameValuePair>
-                <nameValuePair>
-                    <name>ProcessingCDADocument</name>
-                    <value>
-                        <boolean>true</boolean>
-                    </value>
-                </nameValuePair>
-                <nameValuePair>
-                    <name>RunPatientLevelClassification</name>
-                    <value>
-                        <boolean>true</boolean>
-                    </value>
-                </nameValuePair>
-            </configurationParameterSettings>
-        </casProcessor>
-    </casProcessors>
-    <cpeConfig>
-        <numToProcess>-1</numToProcess>
-        <deployAs>immediate</deployAs>
-        <checkpoint batch="0" time="300000ms"/>
-        <timerImpl/>
-    </cpeConfig>
-</cpeDescription>
+<?xml version="1.0" encoding="UTF-8"?><cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+    <collectionReader>
+        <collectionIterator>
+            <descriptor>
+                <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+            </descriptor>
+            <configurationParameterSettings>
+                <nameValuePair>
+                    <name>InputDirectory</name>
+                    <value>
+                        <string>data/test/testcda</string>
+                    </value>
+                </nameValuePair>
+            </configurationParameterSettings>
+        </collectionIterator>
+    </collectionReader>
+    <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+        <casProcessor deployment="integrated" name="SimulatedProdAggregateTAE_CDA">
+            <descriptor>
+                <import location="../analysis_engine/SimulatedProdSmokingTAE_CDA.xml"/>
+            </descriptor>
+            <deploymentParameters/>
+            <errorHandling>
+                <errorRateThreshold action="terminate" value="0/1000"/>
+                <maxConsecutiveRestarts action="terminate" value="30"/>
+                <timeout max="100000" default="-1"/>
+            </errorHandling>
+            <checkpoint batch="10000" time="1000ms"/>
+        </casProcessor>
+        <casProcessor deployment="integrated" name="RecordResolutionCasConsumer">
+            <descriptor>
+                <import location="../cas_consumer/RecordResolutionCasConsumer.xml"/>
+            </descriptor>
+            <deploymentParameters/>
+            <errorHandling>
+                <errorRateThreshold action="terminate" value="0/1000"/>
+                <maxConsecutiveRestarts action="terminate" value="30"/>
+                <timeout max="100000" default="-1"/>
+            </errorHandling>
+            <checkpoint batch="10000" time="1000ms"/>
+            <configurationParameterSettings>
+                <nameValuePair>
+                    <name>OutputFile</name>
+                    <value>
+                        <string>data/test/output/record_resolution.txt</string>
+                    </value>
+                </nameValuePair>
+                <nameValuePair>
+                    <name>ProcessingCDADocument</name>
+                    <value>
+                        <boolean>true</boolean>
+                    </value>
+                </nameValuePair>
+                <nameValuePair>
+                    <name>RunPatientLevelClassification</name>
+                    <value>
+                        <boolean>true</boolean>
+                    </value>
+                </nameValuePair>
+            </configurationParameterSettings>
+        </casProcessor>
+    </casProcessors>
+    <cpeConfig>
+        <numToProcess>-1</numToProcess>
+        <deployAs>immediate</deployAs>
+        <checkpoint batch="0" time="300000ms"/>
+        <timerImpl/>
+    </cpeConfig>
+</cpeDescription>

Modified: incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
URL: http://svn.apache.org/viewvc/incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml?rev=1423509&r1=1423508&r2=1423509&view=diff
==============================================================================
--- incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
(original)
+++ incubator/ctakes/branches/ctakes-3.0.0-incubating/ctakes-smoking-status/desc/collection_processing_engine/Sample_SmokingStatus_output_flatfile.xml
Tue Dec 18 16:16:03 2012
@@ -1,78 +1,63 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-
-    Licensed to the Apache Software Foundation (ASF) under one
-    or more contributor license agreements.  See the NOTICE file
-    distributed with this work for additional information
-    regarding copyright ownership.  The ASF licenses this file
-    to you under the Apache License, Version 2.0 (the
-    "License"); you may not use this file except in compliance
-    with the License.  You may obtain a copy of the License at
-
-      http://www.apache.org/licenses/LICENSE-2.0
-
-    Unless required by applicable law or agreed to in writing,
-    software distributed under the License is distributed on an
-    "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-    KIND, either express or implied.  See the License for the
-    specific language governing permissions and limitations
-    under the License.
-
--->
-<cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
-<collectionReader>
-<collectionIterator>
-<descriptor>
-<import location="../../coredesc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
-</descriptor>
-<configurationParameterSettings>
-<nameValuePair>
-<name>InputDirectory</name>
-<value>
-<string>testdata/smokingtest/testinput</string>
-</value>
-</nameValuePair>
-</configurationParameterSettings>
-</collectionIterator>
-</collectionReader>
-<casProcessors casPoolSize="3" processingUnitThreadCount="1">
-<casProcessor deployment="integrated" name="SimulatedProdSmokingTAE">
-<descriptor>
-<import location="../analysis_engine/SimulatedProdSmokingTAE.xml"/>
-</descriptor>
-<deploymentParameters/>
-<errorHandling>
-<errorRateThreshold action="terminate" value="0/1000"/>
-<maxConsecutiveRestarts action="terminate" value="30"/>
-<timeout max="100000" default="-1"/>
-</errorHandling>
-<checkpoint batch="10000" time="1000ms"/>
-</casProcessor>
-<casProcessor deployment="integrated" name="RecordResolutionCasConsumer">
-<descriptor>
-<import location="../cas_consumer/RecordResolutionCasConsumer.xml"/>
-</descriptor>
-<deploymentParameters/>
-<errorHandling>
-<errorRateThreshold action="terminate" value="0/1000"/>
-<maxConsecutiveRestarts action="terminate" value="30"/>
-<timeout max="100000" default="-1"/>
-</errorHandling>
-<checkpoint batch="10000" time="1000ms"/>
-<configurationParameterSettings>
-<nameValuePair>
-<name>RunPatientLevelClassification</name>
-<value>
-<boolean>true</boolean>
-</value>
-</nameValuePair>
-</configurationParameterSettings>
-</casProcessor>
-</casProcessors>
-<cpeConfig>
-<numToProcess>-1</numToProcess>
-<deployAs>immediate</deployAs>
-<checkpoint batch="0" time="300000ms"/>
-<timerImpl></timerImpl>
-</cpeConfig>
+<?xml version="1.0" encoding="UTF-8"?><cpeDescription xmlns="http://uima.apache.org/resourceSpecifier">
+    <collectionReader>
+        <collectionIterator>
+            <descriptor>
+                <import location="../../../ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml"/>
+            </descriptor>
+            <configurationParameterSettings>
+                <nameValuePair>
+                    <name>InputDirectory</name>
+                    <value>
+                        <string>data/test</string>
+                    </value>
+                </nameValuePair>
+            </configurationParameterSettings>
+        </collectionIterator>
+    </collectionReader>
+    <casProcessors casPoolSize="3" processingUnitThreadCount="1">
+        <casProcessor deployment="integrated" name="SimulatedProdAggregateTAE">
+            <descriptor>
+                <import location="../analysis_engine/SimulatedProdSmokingTAE.xml"/>
+            </descriptor>
+            <deploymentParameters/>
+            <errorHandling>
+                <errorRateThreshold action="terminate" value="0/1000"/>
+                <maxConsecutiveRestarts action="terminate" value="30"/>
+                <timeout max="100000" default="-1"/>
+            </errorHandling>
+            <checkpoint batch="10000" time="1000ms"/>
+        </casProcessor>
+        <casProcessor deployment="integrated" name="RecordResolutionCasConsumer">
+            <descriptor>
+                <import location="../cas_consumer/RecordResolutionCasConsumer.xml"/>
+            </descriptor>
+            <deploymentParameters/>
+            <errorHandling>
+                <errorRateThreshold action="terminate" value="0/1000"/>
+                <maxConsecutiveRestarts action="terminate" value="30"/>
+                <timeout max="100000" default="-1"/>
+            </errorHandling>
+            <checkpoint batch="10000" time="1000ms"/>
+            <configurationParameterSettings>
+                <nameValuePair>
+                    <name>OutputFile</name>
+                    <value>
+                        <string>data/test/output/record_resolution.txt</string>
+                    </value>
+                </nameValuePair>
+                <nameValuePair>
+                    <name>RunPatientLevelClassification</name>
+                    <value>
+                        <boolean>true</boolean>
+                    </value>
+                </nameValuePair>
+            </configurationParameterSettings>
+        </casProcessor>
+    </casProcessors>
+    <cpeConfig>
+        <numToProcess>-1</numToProcess>
+        <deployAs>immediate</deployAs>
+        <checkpoint batch="0" time="300000ms"/>
+        <timerImpl/>
+    </cpeConfig>
 </cpeDescription>



Mime
View raw message