ctakes-dev mailing list archives: August 2012

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Mattmann, Chris A (388J) Draft Incubator report for August 2012 Wed, 01 Aug, 01:17
Miller, Timothy licensing question Wed, 01 Aug, 11:01
Jörn Kottmann Re: licensing question Wed, 01 Aug, 12:00
Tim Miller Re: licensing question Wed, 01 Aug, 13:04
Masanz, James J. RE: Draft Incubator report for August 2012 Wed, 01 Aug, 15:09
Grant Ingersoll Re: Draft Incubator report for August 2012 Wed, 01 Aug, 15:16
Mattmann, Chris A (388J) Re: licensing question Wed, 01 Aug, 17:51
Mattmann, Chris A (388J) Re: licensing question Wed, 01 Aug, 17:57
Steven Bethard Re: licensing question Wed, 01 Aug, 18:08
vijay garla Re: licensing question Wed, 01 Aug, 18:23
Savova, Guergana RE: licensing question Wed, 01 Aug, 18:30
Steven Bethard Re: licensing question Wed, 01 Aug, 18:45
Mattmann, Chris A (388J) Re: licensing question Wed, 01 Aug, 19:37
Mattmann, Chris A (388J) Re: licensing question Wed, 01 Aug, 19:43
Mattmann, Chris A (388J) Re: licensing question Wed, 01 Aug, 19:51
Bleeker, Troy C. RE: Draft Incubator report for August 2012 Wed, 01 Aug, 21:05
Mattmann, Chris A (388J) Re: Draft Incubator report for August 2012 Wed, 01 Aug, 21:12
Craig L Russell Re: request to be contributor Wed, 01 Aug, 21:36
Chen, Pei INFRA-5079 Fri, 03 Aug, 14:26
Pei Chen (JIRA) [jira] [Created] (CTAKES-15) Runtime exception for certain documents with Assertion module Fri, 03 Aug, 18:21
Jörn Kottmann Re: INFRA-5079 Mon, 06 Aug, 11:09
Chen, Pei RE: INFRA-5079 Mon, 06 Aug, 14:42
Chen, Pei FW: INFRA-5079 Mon, 06 Aug, 14:54
Oleg Tikhonov where is a code Tue, 07 Aug, 13:40
Chen, Pei RE: where is a code Tue, 07 Aug, 14:18
Marvin Incubator PMC/Board report for Aug 2012 ([ppmc]) Tue, 07 Aug, 15:02
Oleg Tikhonov Re: where is a code Tue, 07 Aug, 15:56
Masanz, James J. RE: INFRA-5079 Wed, 08 Aug, 19:36
Chen, Pei RE: INFRA-5079 Wed, 08 Aug, 20:42
Coarr, Matt Re: INFRA-5079 Thu, 09 Aug, 12:54
Masanz, James J. RE: INFRA-5079 Thu, 09 Aug, 13:29
Chen, Pei RE: INFRA-5079 Thu, 09 Aug, 14:53
Chen, Pei UIMA's subiterator Thu, 09 Aug, 15:18
Steven Bethard Re: UIMA's subiterator Thu, 09 Aug, 15:31
Masanz, James J. RE: UIMA's subiterator Thu, 09 Aug, 15:32
Coarr, Matt Re: UIMA's subiterator Thu, 09 Aug, 15:33
Coarr, Matt Re: UIMA's subiterator Thu, 09 Aug, 15:41
Chen, Pei RE: UIMA's subiterator Thu, 09 Aug, 15:50
Steven Bethard Re: UIMA's subiterator Thu, 09 Aug, 16:09
Jörn Kottmann Re: UIMA's subiterator Thu, 09 Aug, 16:19
Pei Chen (JIRA) [jira] [Closed] (CTAKES-1) Pre-Migration- ICLA signed by initial committers Thu, 09 Aug, 19:58
Pei Chen (JIRA) [jira] [Closed] (CTAKES-15) Runtime exception for certain documents with Assertion module Thu, 09 Aug, 20:08
Pei Chen (JIRA) [jira] [Resolved] (CTAKES-4) Pre-Migration- Communication with other developers on Apache Migration Thu, 09 Aug, 20:10
Pei Chen (JIRA) [jira] [Created] (CTAKES-16) use uimaFIT's selectCovered() instead of UIMA's subiterator Thu, 09 Aug, 20:24
Pei Chen (JIRA) [jira] [Closed] (CTAKES-3) Pre-Migration- Apache Accounts Created for initial committers Thu, 09 Aug, 20:24
Pei Chen (JIRA) [jira] [Closed] (CTAKES-5) Pre-Migration- Populate Apache cTAKES Project CMS/wiki with content Thu, 09 Aug, 21:15
James Joseph Masanz (JIRA) [jira] [Created] (CTAKES-17) include term rather than just CUI(s) Mon, 13 Aug, 16:06
Chen, Pei new committer: Matt Coarr Tue, 14 Aug, 17:16
Chen, Pei new committer: Tim Miller Tue, 14 Aug, 17:17
Chen, Pei new committer: Steve Bethard Thu, 16 Aug, 19:49
Chen, Pei new committer: Dmitriy Dligach Thu, 16 Aug, 19:50
James Joseph Masanz (JIRA) [jira] [Created] (CTAKES-18) add XxxxEntity|EventMention types for other NEs similar to MedicationEventMention Fri, 17 Aug, 17:06
Tim Miller (JIRA) [jira] [Created] (CTAKES-19) ctakes constituency parser does not generate function tags Fri, 17 Aug, 17:59
Tim Miller (JIRA) [jira] [Commented] (CTAKES-19) ctakes constituency parser does not generate function tags Sat, 18 Aug, 20:59
Chen, Pei Apache Confluence wiki for documentation? Mon, 20 Aug, 15:19
Masanz, James J. RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 15:41
Chen, Pei RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 15:44
Bleeker, Troy C. RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 15:45
Jörn Kottmann Re: Apache Confluence wiki for documentation? Mon, 20 Aug, 15:56
Bleeker, Troy C. RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 16:04
Chen, Pei RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 16:10
Bleeker, Troy C. RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 16:39
Masanz, James J. RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 16:47
Chen, Pei RE: Apache Confluence wiki for documentation? Mon, 20 Aug, 17:21
Pei Chen (JIRA) [jira] [Created] (CTAKES-20) DrugNER to use existing RxNorm mentions rather than perform it's own lookup Wed, 22 Aug, 18:28
Tim Miller (JIRA) [jira] [Assigned] (CTAKES-19) ctakes constituency parser does not generate function tags Wed, 22 Aug, 18:40
Pei Chen (JIRA) [jira] [Updated] (CTAKES-20) DrugNER to use existing RxNorm mentions rather than perform it's own lookup Wed, 22 Aug, 20:34
Pei Chen (JIRA) [jira] [Created] (CTAKES-21) DrugNER seems to be able to pick up the signatures for “20 mg Tamoxifen” but not “Tamoxifen 20mg". Wed, 22 Aug, 20:38
Pei Chen (JIRA) [jira] [Created] (CTAKES-22) Drug signature elements for Frequency and Frequency Unit are not being recognized due to new handling of the hyphenated terms. This will be fixed in a future release Wed, 22 Aug, 20:38
Pei Chen (JIRA) [jira] [Created] (CTAKES-23) Auto detect which annotator to use based on notes Wed, 22 Aug, 20:42
Pei Chen (JIRA) [jira] [Created] (CTAKES-24) extraneous jars in cTAKES 2.5 Wed, 22 Aug, 20:46
Pei Chen (JIRA) [jira] [Created] (CTAKES-25) retrain rest of models using OpenNLP 1.5 Wed, 22 Aug, 20:48
Pei Chen (JIRA) [jira] [Created] (CTAKES-26) concept unique identifiers(CUI) from lvg dictionary Wed, 22 Aug, 20:50
Pei Chen (JIRA) [jira] [Created] (CTAKES-27) Upgrade cTAKES dependencies/libraries Wed, 22 Aug, 20:52
Pei Chen (JIRA) [jira] [Created] (CTAKES-28) Externalize dictionarylookup/UMLS password to password file or variable Wed, 22 Aug, 20:52
Pei Chen (JIRA) [jira] [Created] (CTAKES-29) Continuous Integration with cTAKES Wed, 22 Aug, 20:54
Pei Chen (JIRA) [jira] [Created] (CTAKES-31) constrainToWindow assumes tokens are not sorted Wed, 22 Aug, 20:56
Pei Chen (JIRA) [jira] [Created] (CTAKES-30) Maven integration of cTAKES components Wed, 22 Aug, 20:56
Pei Chen (JIRA) [jira] [Created] (CTAKES-32) dictionary lookup creates new LookupTokens many times Wed, 22 Aug, 20:58
Pei Chen (JIRA) [jira] [Created] (CTAKES-33) Add Relation Extractor Wed, 22 Aug, 20:58
Pei Chen (JIRA) [jira] [Created] (CTAKES-34) icTAKES.jar is missing from the .gz distributions Wed, 22 Aug, 21:00
Pei Chen (JIRA) [jira] [Created] (CTAKES-35) SyntaxAttributeCalculator.java hardcodes file names Wed, 22 Aug, 21:02
Pei Chen (JIRA) [jira] [Created] (CTAKES-36) remove generated types from source tree Wed, 22 Aug, 21:04
Pei Chen (JIRA) [jira] [Created] (CTAKES-37) Add AE from ARC Wed, 22 Aug, 21:04
Pei Chen (JIRA) [jira] [Created] (CTAKES-38) Orange book is not the most recent Wed, 22 Aug, 21:06
Pei Chen (JIRA) [jira] [Created] (CTAKES-39) Upgrade LVG to a later version Wed, 22 Aug, 21:06
Pei Chen (JIRA) [jira] [Created] (CTAKES-42) user guide - Note that test1.xml uses CDA not plaintext AE Wed, 22 Aug, 21:08
Pei Chen (JIRA) [jira] [Created] (CTAKES-41) cTAKES forces end of sentence at end of line Wed, 22 Aug, 21:08
Pei Chen (JIRA) [jira] [Created] (CTAKES-40) non smoker words file Wed, 22 Aug, 21:08
Pei Chen (JIRA) [jira] [Created] (CTAKES-43) Spaces in directory names STILL cause problems for UIMA Wed, 22 Aug, 21:10
Pei Chen (JIRA) [jira] [Created] (CTAKES-44) Tokenizer does not handle Windows-style newlines Wed, 22 Aug, 21:12
Pei Chen (JIRA) [jira] [Created] (CTAKES-46) ctakes running problem (run cvd - ClassNotFoundException) Wed, 22 Aug, 21:14
Tim Miller (JIRA) [jira] [Assigned] (CTAKES-35) SyntaxAttributeCalculator.java hardcodes file names Wed, 22 Aug, 21:14
Pei Chen (JIRA) [jira] [Created] (CTAKES-45) opennlp-tools-1.4.3 for medKAT/p Wed, 22 Aug, 21:14
Pei Chen (JIRA) [jira] [Created] (CTAKES-47) codes and OUI in CreateLuceneIndexForSnomedLikeSample.java Wed, 22 Aug, 21:16
Pei Chen (JIRA) [jira] [Created] (CTAKES-48) negation annotator - Sentence type used in code not in descr Wed, 22 Aug, 21:18
Pei Chen (JIRA) [jira] [Created] (CTAKES-49) RomanNumeralAnnotation is misspelled in comparison tool Wed, 22 Aug, 21:20
Pei Chen (JIRA) [jira] [Created] (CTAKES-50) Remove UIMA Deprecated references in Annotators Wed, 22 Aug, 21:20
Pei Chen (JIRA) [jira] [Created] (CTAKES-51) Implement Common Type System for extended components Wed, 22 Aug, 21:22
Chen, Pei cTAKES SF Bug Tracker has moved to Apache Jira Wed, 22 Aug, 21:27
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