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From "Masanz, James J." <Masanz.Ja...@mayo.edu>
Subject RE: CTAKES-248- include original covered text of NEs which can't be recovered post if NE is from a disjoint span
Date Tue, 01 Oct 2013 19:37:21 GMT
Yes, this would help address that multiple permutations example.  The new getOriginalText method
would return something like "Acute|Disease".  Right now I'm thinking of just using vertical
bar as delimiter, to start with at least, but think it should be configurable.

-----Original Message-----
From: dev-return-2067-Masanz.James=mayo.edu@ctakes.apache.org [mailto:dev-return-2067-Masanz.James=mayo.edu@ctakes.apache.org]
On Behalf Of Chen, Pei
Sent: Tuesday, October 01, 2013 9:38 AM
To: dev@ctakes.apache.org
Subject: CTAKES-248- include original covered text of NEs which can't be recovered post if
NE is from a disjoint span

This sounds pretty cool.
James, will this address the multiple permutations lookup example:
"Acute alcoholic liver disease."  There is a cui: C0001314: Acute Disease, but if you getCoveredText(),
on the UMLSConcept, you would actually get the same "Acute alcoholic liver disease" instead
of "Acute Disease".
So, there is a new field called getOriginalText() that matched the hit?

> -----Original Message-----
> From: james-masanz@apache.org [mailto:james-masanz@apache.org]
> Sent: Monday, September 30, 2013 5:49 PM
> To: commits@ctakes.apache.org
> Subject: svn commit: r1527792 - /ctakes/trunk/ctakes-type-
> system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst
> em.xml
> Author: james-masanz
> Date: Mon Sep 30 21:48:01 2013
> New Revision: 1527792
> URL: http://svn.apache.org/r1527792
> Log:
> CTAKES-248  - for named entities, since the annotation just has the begin and
> end offset, it is requested to have a way to get the original covered text
> (especially for disjoint spans) so it is possible to know which words in the
> covered text were actually used in the matching to the dictionary entry
> Modified:
>     ctakes/trunk/ctakes-type-
> system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst
> em.xml
> Modified: ctakes/trunk/ctakes-type-
> system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst
> em.xml
> URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-type-
> system/src/main/resources/org/apache/ctakes/typesystem/types/TypeSyst
> em.xml?rev=1527792&r1=1527791&r2=1527792&view=diff
> ==========================================================
> ====================
> Binary files - no diff available.

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