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From "John Green" <john.travis.gr...@gmail.com>
Subject Re: De-identified lab tests dataset
Date Tue, 30 Sep 2014 10:22:09 GMT
How large? And across how many EMRs? 

Sent from Mailbox

On Mon, Sep 29, 2014 at 6:58 PM, Ajay Jain <ajayjain@mobileinsights.net>

> Sorry, I wasn't clear. I am working on a related project and trying to figure out if
the code can be repurposed for a lab mention annotator for cTAKES. From what I have seen,
test names from different institutions are not standardized which makes it hard to standardize
the resulting annotation. Getting access to a larger lab tests dataset (structured) will help
me fine tune the model. 
> Hope this helps. 
> Ajay
> Sent from my iPhone
>> On Sep 29, 2014, at 2:12 PM, "Savova, Guergana" <Guergana.Savova@childrens.harvard.edu>
>> Ajay,
>> cTAKES currently does not implement a method to discover labs from the text. The
motivation is that you can get that easily from the structured part of the EMR (what Pete
explained below). Hope this makes sense!
>> --Guergana
>> -----Original Message-----
>> From: Peter Szolovits [mailto:psz@mit.edu] 
>> Sent: Monday, September 29, 2014 2:32 PM
>> To: dev@ctakes.apache.org
>> Subject: Re: De-identified lab tests dataset
>> Ajay, I'm confused by your query.  cTakes is good at interpreting text, but most
lab test results are reported in tabular form that is most appropriately searched by SQL queries.
 Sometimes lab results are also reported in narrative notes, but parsing those is often more
a matter of deciphering the text structure of tables than of parsing real English text.  What
am I misunderstanding?
>> --Pete Sz.
>>> On Sep 29, 2014, at 2:25 PM, Ajay Jain <ajayjain@mobileinsights.net> wrote:
>>> Hello All,
>>> I am working on a use case for lab tests data using cTAKES and my 
>>> online search to find a test dataset has been futile.  I'll greatly 
>>> appreciate if someone can share such a dataset or can point me in the 
>>> right direction to go looking for one.
>>> Best,
>>> Ajay
>>> --
>>> Founder & CEO
>>> Mobile Insights, Inc.
>>> (630) 408-8623
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