ctakes-dev mailing list archives

Site index · List index
Message view « Date » · « Thread »
Top « Date » · « Thread »
From "Savova, Guergana" <Guergana.Sav...@childrens.harvard.edu>
Subject RE: Content extract and classification of Patient's note
Date Wed, 20 May 2015 14:10:26 GMT
You would probably need to write an annotator for PSA and TNM staging as currently cTAKES does
not these cancer-specific variables extracted. We are working on such annotators but will
be some time before we release them.

However, it should not be difficult for you to add a new annotator.
--Guergana Savova

From: Sangram Patil [mailto:sangramp@figmd.com]
Sent: Wednesday, May 20, 2015 10:02 AM
To: dev@ctakes.apache.org
Subject: Re: Content extract and classification of Patient's note

Thanks for the information!!!

I have notes of cancer patients and would like to extract values such PSA, Gleason TNM staging
mentioned in the text-note. Could you please provide inputs.

On Mon, May 18, 2015 at 6:40 PM, Chen, Pei <Pei.Chen@childrens.harvard.edu<mailto:Pei.Chen@childrens.harvard.edu>>
cTAKES is modular by design so it is comprised of a collection of components/modules with
some Default or Sample Aggregate pipelines. There could be an endless combination depending
on the task at hand. I would suggest checking out the components guide (even though it may
be outdated) to figure out what would be needed for a specific task...

On May 18, 2015, at 2:18 AM, Sangram Patil <sangramp@figmd.com<mailto:sangramp@figmd.com><mailto:sangramp@figmd.com<mailto:sangramp@figmd.com>>>


I am pretty new to cTakes, and need to extract fields from text note of patient. Could you
please tell me which AE is suitable. Also can I have some sample code examples for my job.
Attached is the sample patient note.


Sangram Patil

* Please include your practice ID in your correspondence.


Sangram Patil
Team Lead-Core Dev
Cell: +91 992 293 9497

CONFIDENTIALITY NOTICE<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.figmd.com_terms_&d=BQMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=Oxn4f1QXmtAtTH18M3rQM0FB6wb1OMW3zDJAWDFQJmk&s=S8-40SDamVkFw0HH9kD7-reHfS8-YPZgybcA9Q7s61M&e=>
  • Unnamed multipart/alternative (inline, None, 0 bytes)
View raw message