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From Alaa al Barari <alaa.albar...@gmail.com>
Subject jcas work with a list of schemas
Date Mon, 06 Feb 2017 09:29:39 GMT
Hi,

I have my own dictionary and it has a lot of schemas which takes a lot of
time. please see code below, how to make it work with specific list of
schemas instead of all of them

                                jcas = pipeline.newJCas();
jcas.setDocumentText(sentence.getCoveredText());
pipeline.process(jcas);
String previousEntity = "";
for ( IdentifiedAnnotation entity : JCasUtil.select( jcas,
IdentifiedAnnotation.class ) ) {

final FSArray fsArray = entity.getOntologyConceptArr();
if ( fsArray == null ) {
continue;
}
String entityString = entity.getCoveredText();
System.out.println( "Entity: " + entity.getCoveredText()
+ " === Polarity: " + entity.getPolarity()
+ " === Subject: " + entity.getSubject()
+ " === History? " + (entity.getHistoryOf() ==
CONST.NE_HISTORY_OF_PRESENT));

final FeatureStructure[] featureStructures = fsArray.toArray();
final Collection<String> entityCodes = new ArrayList<>(
featureStructures.length );
previousEntity = entityString;
for ( FeatureStructure featureStructure : featureStructures ) {
if ( featureStructure instanceof UmlsConcept ) {
final UmlsConcept umlsConcept = (UmlsConcept)featureStructure;
String entityCode = umlsConcept.getCode();
String entityScheme = umlsConcept.getCodingScheme();
String description = umlsConcept.getCodeDescription();
if (entityCode == null || entityScheme == null) {
continue;
}
if (schemes.contains(entityScheme) || schemes.contains("all")) {
System.out.println(entityScheme + "_" + entityCode + "_" + description);
}
}
}

}
}


Regards.
-- 
Eng Alaa Al-Barari
phone 0599297470

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