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From Piyush Jain <pjain2...@fau.edu>
Subject Re: Drug NER missing dosage
Date Wed, 15 Feb 2017 22:10:07 GMT
Hello Dev,

Please remove me from this mailing list.


Piyush Jain

On Mon, Feb 13, 2017 at 11:24 AM Erin Nicole Gustafson <
erin.gustafson@northwestern.edu> wrote:

> Hi all-
> I am running the Drug NER component as a part of the clinical pipeline. My
> goal is to extract the drug name, dosage, frequency, and route from some
> clinical text. Currently, I am able to get annotations for the name,
> frequency, and route, but not dosage. I'm noticing that when the new
> DrugMention object is created within the DrugMentionAnnotator, that the
> critical bit of code for creating the dosage element gets skipped because
> the result of doseTokenItr.hasNext() is false. I'm not sure why this is
> happening.
> In case this is helpful information: I am running the clinical pipeline by
> running the main method in ClinicalPipelineFactory with the
> DrugMentionAnnotator added to the fast pipeline. I'm currently working with
> a single hard-coded drug mention example in the form of: Name dosage
> frequency route.
> Any help is much appreciated!
> Thanks,
> Erin

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