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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject RE: CAS Pool
Date Fri, 10 Feb 2017 21:18:11 GMT
Yes, thanks.  I will try to look into this a little later.

Sean

From: shahid ashraf [mailto:shahid@trialx.com]
Sent: Friday, February 10, 2017 3:45 PM
To: Finan, Sean
Subject: Re: CAS Pool

Are you looking for these lines


11 Feb 2017 02:13:59  INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip

11 Feb 2017 02:14:06  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg with config file
= /Users/shahid/projects/healthnlp/examples/ctakes-web-client/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties

11 Feb 2017 02:14:06  INFO LvgCmdApiResourceImpl -   config file absolute path = /Users/shahid/projects/healthnlp/examples/ctakes-web-client/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties

11 Feb 2017 02:14:06  INFO LvgCmdApiResourceImpl - cwd = /Users/shahid/projects/healthnlp/examples/ctakes-web-client

11 Feb 2017 02:14:06  INFO LvgCmdApiResourceImpl - cd /Users/shahid/projects/healthnlp/examples/ctakes-web-client/target/classes/org/apache/ctakes/lvg/

11 Feb 2017 02:14:06  INFO LvgCmdApiResourceImpl - cd /Users/shahid/projects/healthnlp/examples/ctakes-web-client

11 Feb 2017 02:14:07  INFO DrugMentionAnnotator - Finite state machines loaded.

On Sat, Feb 11, 2017 at 2:01 AM, Finan, Sean <Sean.Finan@childrens.harvard.edu<mailto:Sean.Finan@childrens.harvard.edu>>
wrote:
Hi Shahid,

Are you getting any log information from the lvg classes during initialization?

Sean

From: shahid ashraf [mailto:shahid@trialx.com<mailto:shahid@trialx.com>]
Sent: Friday, February 10, 2017 2:50 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>; Finan, Sean
Subject: CAS Pool


Hi

I was  able to create the caspool using the descriptor approach, but instead of getting ctakes
blocked which was happening without caspool when multiple threads are ran.
Currently i am getting following error:


Feb 10, 2017 8:44:06 PM org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl
callAnalysisComponentProcess(430)

SEVERE: Exception occurred

org.apache.uima.analysis_engine.AnalysisEngineProcessException

            at org.apache.ctakes.lvg.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__org.apache.ctakes.lvg.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=ZDqfnqc8s6SO7UnXkW_LfiKDd3-1jgYMVLoLMdCrVC8&s=mz9hN1V1RYm97GOnmPU3P52EoPoye6lBvN6AhIFsTL8&e=>.LvgAnnotator.process(LvgAnnotator.java:310)

            at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)

            at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:396)

            at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:314)

            at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.processUntilNextOutputCas(ASB_impl.java:570)

            at org.apache.uima.analysis_engine.asb.impl.ASB_impl$AggregateCasIterator.<init>(ASB_impl.java:412)

            at org.apache.uima.analysis_engine.asb.impl.ASB_impl.process(ASB_impl.java:344)

            at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl.processAndOutputNewCASes(AggregateAnalysisEngine_impl.java:265)

            at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:269)

            at org.apache.uima.analysis_engine.impl.MultiprocessingAnalysisEngine_impl.process(MultiprocessingAnalysisEngine_impl.java:199)

            at org.apache.ctakes.web.client.servlet.DemoServlet.doPost(DemoServlet.java:135)

            at javax.servlet.http.HttpServlet.service(HttpServlet.java:755)

            at javax.servlet.http.HttpServlet.service(HttpServlet.java:848)

            at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:684)

            at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501)

            at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137)

            at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557)

            at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231)

            at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086)

            at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428)

            at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193)

            at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020)

            at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135)

            at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116)

            at org.eclipse.jetty.server.Server.handle(Server.java:370)

            at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:494)

            at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:982)

            at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1043)

            at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865)

            at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240)

            at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82)

            at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:667)

            at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52)

            at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608)

            at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543)

            at java.lang.Thread.run(Thread.java:745)

Caused by: org.apache.uima.analysis_engine.AnalysisEngineProcessException

            at org.apache.ctakes.lvg.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__org.apache.ctakes.lvg.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=ZDqfnqc8s6SO7UnXkW_LfiKDd3-1jgYMVLoLMdCrVC8&s=mz9hN1V1RYm97GOnmPU3P52EoPoye6lBvN6AhIFsTL8&e=>.LvgAnnotator.setCanonicalForm(LvgAnnotator.java:372)

            at org.apache.ctakes.lvg.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__org.apache.ctakes.lvg.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=ZDqfnqc8s6SO7UnXkW_LfiKDd3-1jgYMVLoLMdCrVC8&s=mz9hN1V1RYm97GOnmPU3P52EoPoye6lBvN6AhIFsTL8&e=>.LvgAnnotator.annotateRange(LvgAnnotator.java:342)

            at org.apache.ctakes.lvg.ae<https://urldefense.proofpoint.com/v2/url?u=http-3A__org.apache.ctakes.lvg.ae&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=fs67GvlGZstTpyIisCYNYmQCP6r0bcpKGd4f7d4gTao&m=ZDqfnqc8s6SO7UnXkW_LfiKDd3-1jgYMVLoLMdCrVC8&s=mz9hN1V1RYm97GOnmPU3P52EoPoye6lBvN6AhIFsTL8&e=>.LvgAnnotator.process(LvgAnnotator.java:307)

            ... 35 more

Caused by: java.lang.NullPointerException


--
with Regards
Shahid Ashraf



--
with Regards
Shahid Ashraf
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