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From Sandeep Byatha Gururaja rao <sandeep...@arisglobal.com>
Subject RE: cTAKES Rest Service Development - Dictionary GUI MySQL Progress + 1 Concern
Date Mon, 18 Dec 2017 07:03:49 GMT

Great job Matthew !!!


From: Matthew Vita [mailto:matthewvita48@gmail.com]
Sent: Monday, December 18, 2017 11:53 AM
To: dev@ctakes.apache.org; Sandeep Byatha Gururaja rao; Shane Chesnutt
Subject: cTAKES Rest Service Development - Dictionary GUI MySQL Progress + 1 Concern

Hi Gandhi, Sean, Tim, Alex, James,

Good news, I was able to get MySQL running in the `ctakes-gui` (recall that I am building
in a toggle so that folks can create dictionaries using MySQL rather than HSQLDB script files).

I found out the source of the issue with bringing in the MySQL dependency. This one definitely
took me a while and was super subtle! If you visit /ctakes/ctakes-distribution/src/main/assembly/bin.xml,
<exclude>mysql:*</exclude>is present because it's a
 non-asf compliant dependency used by ytex.
Removing the exclude and addingin <include>mysql:mysql-connector-java</include>
gets the correct result:




% ls -lash | grep mysql

  3912 -rw-r--r--   1 matthew  staff   1.9M Dec 14 20:23 mysql-connector-java-6.0.6.jar

Just for completeness, this is the exact POM entry:






Is there anyway we can use MySQL in cTAKES in a way that is compliant with ASF? I wonder if
MariaDB or Postgresql would be better because they work with JDBC and are free/open source.
Of course, I am biased towards MySQL/MariaDB because the (near) future users of cTAKES Rest
Service in the OpenEMR space are going to want MySQL/MariaDB users :). Not a huge deal though.


Matthew Vita
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