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From "Finan, Sean" <Sean.Fi...@childrens.harvard.edu>
Subject Re: Building a dictionary from ontologies [EXTERNAL]
Date Mon, 22 Jan 2018 19:47:55 GMT
Hi Erick,

There is a fourth option that should work

cui | tui | text | preferredText

I would create an importer that creates a -fake- cui.  The cui need not (in this case should
not) start with 'C'.  So, I would import per-owl uri using something like OWL00001.  
tui can be empty, in which case "T000" will be used, =forcing ctakes to create annotations
of unknown semantic type.  

text(s) should contain your synonym(s).

preferredText can be your owl uri.

This should allow you to fake it with an imported owl.  Upon deconstruction of the cas you
will want to look at the preferredTerm for each annotation and ignore the cui and tui.


From: Erick Velazquez <erick.lerouge@gmail.com>
Sent: Monday, January 22, 2018 11:14 AM
To: dev@ctakes.apache.org
Subject: Building a dictionary from ontologies  [EXTERNAL]


I’m building a dictionary from an ontology (OWL), but there is no CUI, neither TUI in the
information. Since the format of a dictionary in cTAKES is CUI | TUI | TEXT, or CUI | TEXT,
is there any specification to create CUIs for terms?


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