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From gandhi rajan <gandhiraja...@gmail.com>
Subject Re: ctakes-web-rest changes [EXTERNAL]
Date Thu, 24 Jan 2019 01:20:55 GMT
This should be really handy Tim. Will have a look on this once my setup is
ready. I m still awaiting for my new personal PC to up and running.

Thanks again.


On Thursday, January 24, 2019, Miller, Timothy <
Timothy.Miller@childrens.harvard.edu> wrote:

> I checked in some code to wrap the REST server in a docker container. The
> good news is, it lets you run a ctakes rest server with a pretty simple
> build command that should be system independent! The bad news is, the image
> is 16Gb, and it has a hard time running on a machine with 8Gb. So this is a
> work in progress, but if anyone wants to try it I'd be happy to hear how it
> works for you. It is in ctakes-web-rest/docker.
> Just run:
> docker build -t ctakes-web-rest .
> from that directory, then run:
> start_rest.sh
> It will take a while for the server to start up because it needs to unpack
> the .war file and initialize all the UIMA modules. If you run:
> docker logs <container id>
> you will be able to see how much progress it has made.
> Once it's started you can navigate in a web browser to
> localhost:8080/ctakes-web-rest and you should see it. Or from a REST client
> api the url will be localhost:8080/ctakes-web-rest/service/analyze
> Thanks
> Tim
> -----Original Message-----
> From: gandhi rajan <gandhirajan.n@gmail.com<mailto:
> gandhi%20rajan%20%3cgandhirajan.n@gmail.com%3e>>
> Reply-to: <dev@ctakes.apache.org>
> To: dev@ctakes.apache.org <dev@ctakes.apache.org<mailto:%
> 22dev@ctakes.apache.org%22%20%3cdev@ctakes.apache.org%3e>>
> Subject: Re: ctakes-web-rest changes [EXTERNAL]
> Date: Sat, 22 Dec 2018 08:40:20 +0530
> Thanks Tim. Great work.
> On Friday, December 21, 2018, Miller, Timothy <
> Timothy.Miller@childrens.harvard.edu<mailto:
> Timothy.Miller@childrens.harvard.edu>> wrote:
> There is certainly no need to apologize! It's 100x easier for me to change
> an existing version that runs than to write it from scratch since I don't
> really know REST that well, so thanks for contributing that code. That's
> the beauty of open source teams with different expertise!
> Tim
> ________________________________________
> From: Gandhi Rajan Natarajan <Gandhi.Natarajan@arisglobal.com<mailto:
> Gandhi.Natarajan@arisglobal.com>>
> Sent: Friday, December 21, 2018 3:13 AM
> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
> Subject: RE: ctakes-web-rest changes [EXTERNAL]
> Hi Tim,
> Thanks for taking your time out and checking this. Have left my comments
> in the JIRA issue. Sorry that I could not improvise on the REST module
> which is more suitable for our business needs due to lack of domain
> expertise.
> Regards,
> Gandhi
> -----Original Message-----
> From: Miller, Timothy <Timothy.Miller@childrens.harvard.edu<mailto:
> Timothy.Miller@childrens.harvard.edu>>
> Sent: Friday, December 21, 2018 1:54 AM
> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>
> Subject: ctakes-web-rest changes
> Hello all,
> I've been trying out the ctakes-web-rest module for a project that uses
> python where I wanted an easy way to send a sentence and get back some CUI
> annotations. There was an issue where the returned json map was keyed by
> the string of the concept, so it would only return one discovered concept
> if more than one had the same string. In the course of fixing that I
> noticed the code was writing the CAS to xmi, then manually parsing that
> file, rather than just interrogating the JCas object, so I rewrote that as
> well to use uimafit. Finally, I commented out the "full" pipeline -- it is
> just too resource heavy to try to run 2 independent pipelines in parallel
> on the same machine. I think the state of the module right now is suitable
> for people who want to try and would make their own changes if they want
> different pipelines (i.e., it's not yet shrink-wrapped) so I would prefer
> it in a state with a simple pipeline that runs well.
> Please take a look at the following issue with the attached patch and let
> me know if there are any obvious problems.
> https://urldefense.proofpoint.com/v2/url?u=https-3A__issues.
> apache.org_jira_browse_CTAKES-2D529&d=DwIGaQ&c=qS4goWBT7poplM69zy_
> 3xhKwEW14JZMSdioCoppxeFU&r=Heup-IbsIg9Q1TPOylpP9FE4GTK-
> OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h&m=k-ebO4GxtYSuyXd6BYi7jXvTFAafL_
> nm1IIPeVzHdKA&s=yHIpAw72nyKeovPpQpuIFW1AxiENG54X5iOIKTtxtto&e=
> Overall, it's in nice shape and I'm excited to get it into a usable shape,
> I think this is a use case that would satisfy a lot of users.
> Tim
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"The best way to find urself is to lose urself in the service of others !!!"

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