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From "Miller, Timothy" <Timothy.Mil...@childrens.harvard.edu>
Subject Re: ctake web service [EXTERNAL] [SUSPICIOUS]
Date Tue, 05 Mar 2019 16:11:46 GMT
The custom dictionary lookup descriptor I use is the one I checked into the svn repo:

for this to work you need to have the snomed/rxnorm dictionary somewhere that the dictionary
module looks for dictionaries (like in $CTAKES_HOME/resources/)

You can also check out the Docker build file for a step-by-step of setting up and building
the war file with that setup.


-----Original Message-----
From: "Miller, Timothy" <Timothy.Miller@childrens.harvard.edu<mailto:%22Miller,%20Timothy%22%20%3cTimothy.Miller@childrens.harvard.edu%3e>>
Reply-to: <dev@ctakes.apache.org>
To: dev@ctakes.apache.org <dev@ctakes.apache.org<mailto:%22dev@ctakes.apache.org%22%20%3cdev@ctakes.apache.org%3e>>
Subject: Re: ctake web service [EXTERNAL] [SUSPICIOUS]
Date: Tue, 5 Mar 2019 15:34:18 +0000

Assuming you meant me, I'm hosting on an ubuntu linux machine, and I'm using the hsql dictionary
instead of the mysql dictionary.

-----Original Message-----
From: Kathy Ferro <healthcare1111@gmail.com<mailto:healthcare1111@gmail.com><mailto:Kathy%20Ferro%20%3chealthcare1111@gmail.com%3e>>
Reply-to: <dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>>
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org>
Subject: Re: ctake web service [EXTERNAL]
Date: Mon, 4 Mar 2019 22:57:22 -0500


What machine do you hosting the WS and mysql on?  I am on window 10
server.  mySQL ini file looks fine.  I'm wondering window and mysql are not
being friend.


On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy <

I don't know what the solution was, but I leave my ctakes REST server
running basically full time and haven't seen time outs yet.

From: gandhi rajan <gandhirajan.n@gmail.com<mailto:gandhirajan.n@gmail.com><mailto:gandhirajan.n@gmail.com>>
Sent: Monday, March 4, 2019 10:43 AM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org>
Subject: Re: ctake web service [EXTERNAL]

Hi Kathy, Sean did respond that there is no timeout happening from cTAKES
end. You might probably have to look at database settings for this closed
connection issue.

Does someone have any clue on this?

On Monday, March 4, 2019, Kathy Ferro <healthcare1111@gmail.com<mailto:healthcare1111@gmail.com><mailto:healthcare1111@gmail.com>>


Do you get any response to this issue?  Does it try to keep the


open while WS is up? Or does it open and close after it's done?

We are still getting this error.
"ERROR JdbcRareWordDictionary - No operations allowed after statement


On Fri, Aug 17, 2018 at 9:43 AM Gandhi Rajan Natarajan <

Hi Kathy,

Sometime back we encountered this issue and the problem seems to be DB
connections getting timed out.

Currently we are using the following implementations:


and "org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory"

Does anybody aware of any timeout settings that needs to be done in


implementations to avoid DB connection timeout issue?

-----Original Message-----
From: Kathy Ferro <healthcare1111@gmail.com<mailto:healthcare1111@gmail.com><mailto:healthcare1111@gmail.com>>
Sent: Thursday, August 16, 2018 11:07 PM
To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:dev@ctakes.apache.org>
Subject: ctake web service


Just want to see if anybody has experience this issue.

If the web service had been up for a day or two, it will drop the
dictionary lookup.  The only result it returns are ConllDependencyNode


in the xmi file;  no mention, no concept, etc...

I haven't have a chance to investigate it, yet.

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