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From Kathy Ferro <healthcare1...@gmail.com>
Subject Re: ctake web service [EXTERNAL] [SUSPICIOUS]
Date Tue, 05 Mar 2019 19:07:11 GMT
Thank you, Tim.
I don't know where I get Sean from.

On Tue, Mar 5, 2019 at 11:11 AM Miller, Timothy <
Timothy.Miller@childrens.harvard.edu> wrote:

> The custom dictionary lookup descriptor I use is the one I checked into
> the svn repo:
>
> http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/customDictionary.xml?view=markup
>
> for this to work you need to have the snomed/rxnorm dictionary somewhere
> that the dictionary module looks for dictionaries (like in
> $CTAKES_HOME/resources/)
>
> You can also check out the Docker build file for a step-by-step of setting
> up and building the war file with that setup.
>
> http://svn.apache.org/viewvc/ctakes/trunk/ctakes-web-rest/docker/Dockerfile?view=markup
>
> Tim
>
>
> -----Original Message-----
> From: "Miller, Timothy" <Timothy.Miller@childrens.harvard.edu<mailto:
> %22Miller,%20Timothy%22%20%3cTimothy.Miller@childrens.harvard.edu%3e>>
> Reply-to: <dev@ctakes.apache.org>
> To: dev@ctakes.apache.org <dev@ctakes.apache.org<mailto:%
> 22dev@ctakes.apache.org%22%20%3cdev@ctakes.apache.org%3e>>
> Subject: Re: ctake web service [EXTERNAL] [SUSPICIOUS]
> Date: Tue, 5 Mar 2019 15:34:18 +0000
>
>
> Assuming you meant me, I'm hosting on an ubuntu linux machine, and I'm
> using the hsql dictionary instead of the mysql dictionary.
> Tim
>
>
> -----Original Message-----
> From: Kathy Ferro <healthcare1111@gmail.com<mailto:
> healthcare1111@gmail.com><mailto:
> Kathy%20Ferro%20%3chealthcare1111@gmail.com%3e>>
> Reply-to: <dev@ctakes.apache.org<mailto:dev@ctakes.apache.org>>
> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:
> dev@ctakes.apache.org>
> Subject: Re: ctake web service [EXTERNAL]
> Date: Mon, 4 Mar 2019 22:57:22 -0500
>
>
> Sean,
>
> What machine do you hosting the WS and mysql on?  I am on window 10
> server.  mySQL ini file looks fine.  I'm wondering window and mysql are not
> being friend.
>
> Thanks
> Kathy
>
> On Mon, Mar 4, 2019 at 10:52 AM Miller, Timothy <
> Timothy.Miller@childrens.harvard.edu<mailto:
> Timothy.Miller@childrens.harvard.edu><mailto:
> Timothy.Miller@childrens.harvard.edu>> wrote:
>
>
>
> I don't know what the solution was, but I leave my ctakes REST server
> running basically full time and haven't seen time outs yet.
> Tim
>
> ________________________________________
> From: gandhi rajan <gandhirajan.n@gmail.com<mailto:gandhirajan.n@gmail.com
> ><mailto:gandhirajan.n@gmail.com>>
> Sent: Monday, March 4, 2019 10:43 AM
> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:
> dev@ctakes.apache.org>
> Subject: Re: ctake web service [EXTERNAL]
>
> Hi Kathy, Sean did respond that there is no timeout happening from cTAKES
> end. You might probably have to look at database settings for this closed
> connection issue.
>
> Does someone have any clue on this?
>
> On Monday, March 4, 2019, Kathy Ferro <healthcare1111@gmail.com<mailto:
> healthcare1111@gmail.com><mailto:healthcare1111@gmail.com>> wrote:
>
>
>
> Gandhi,
>
> Do you get any response to this issue?  Does it try to keep the
>
>
> connection
>
>
> open while WS is up? Or does it open and close after it's done?
>
> We are still getting this error.
> "ERROR JdbcRareWordDictionary - No operations allowed after statement
> closed."
>
> Thanks
> Kathy
>
>
>
> On Fri, Aug 17, 2018 at 9:43 AM Gandhi Rajan Natarajan <
> Gandhi.Natarajan@arisglobal.com<mailto:Gandhi.Natarajan@arisglobal.com
> ><mailto:Gandhi.Natarajan@arisglobal.com>> wrote:
>
>
>
> Hi Kathy,
>
> Sometime back we encountered this issue and the problem seems to be DB
> connections getting timed out.
>
> Currently we are using the following implementations:
>
>
>
>
>
> "org.apache.ctakes.dictionary.lookup2.dictionary.JdbcRareWordDictionary"
>
>
>
>
> and "org.apache.ctakes.dictionary.lookup2.concept.JdbcConceptFactory"
>
> Does anybody aware of any timeout settings that needs to be done in
>
>
>
>
> these
>
>
>
>
> implementations to avoid DB connection timeout issue?
>
> -----Original Message-----
> From: Kathy Ferro <healthcare1111@gmail.com<mailto:
> healthcare1111@gmail.com><mailto:healthcare1111@gmail.com>>
> Sent: Thursday, August 16, 2018 11:07 PM
> To: dev@ctakes.apache.org<mailto:dev@ctakes.apache.org><mailto:
> dev@ctakes.apache.org>
> Subject: ctake web service
>
> Hi,
>
> Just want to see if anybody has experience this issue.
>
> If the web service had been up for a day or two, it will drop the
> dictionary lookup.  The only result it returns are ConllDependencyNode
>
>
> tag
>
>
> in the xmi file;  no mention, no concept, etc...
>
> I haven't have a chance to investigate it, yet.
>
> Kathy
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>
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>
>
> --
> Regards,
> Gandhi
>
> "The best way to find urself is to lose urself in the service of others
> !!!"
>
>
>
>

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