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From Masoud Rouhizadeh <m...@jhu.edu>
Subject Clinical pipeline with multiple dictionaries
Date Thu, 20 Feb 2020 20:36:20 GMT
Dear all,

I'm using cTAKES default clinical pipeline with the following dictionary to extract the following:

- Signs and symptoms (Human Phenotype Ontology)
- Disorders and disease (ICD 10 CM)
- Medications (RxNorms)

Given the processing time of the annotation steps, it would be best if I don't have to run
cTAKES clinical pipeline three times for each of the dictionaries.

What would be your recommendation? Does merging all of the dictionaries make sense? If not,
is there a way to run the fast dictionary lookup three times (for each dictionary) in the
same pipeline and collect CUIs?

Thanks,
Masoud


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