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From "Updike, Clark" <Clark.Upd...@jhuapl.edu>
Subject Re: RE: HDFS file is listable but not queryable (object not found)
Date Fri, 24 Jul 2020 15:14:31 GMT
Using CDH version of 2.6.0.  

I was not able to find any errors on the Drill side besides what I already provided from sqlline.
 However, I did find an exception on some of the datanodes (below).

Everything works find using hdfs cli commands (ls, get, cat).

I have set up security.auth.principal and security.auth.keytab for drill.exec in drill-override.conf.
 That's what got SHOW FILES working.  However, I have not been doing kerberos auth when using
Sqlline.  

Is there any chance that SHOW FILES can work when Sqlline is not authenticated using kerberos,
but the actual query requires Sqlline kerberos auth?  That might explain it if that's how
it worked.  Note the only thing running kerberos is HDFS (not using kerberos on the Drill
parts).

STACKTRACE FROM DATANODE
     dn003:20003:DataXceiver error processing unknown operation  src: /xx.xx.xx.22:53154 dst:
/xx.xx.xx.23:20003
     java.io.IOException: 
          at org.apache.hadoop.hdfs.protocol.datatransfer.sasl.DataTransferSaslUtil.readSaslMessage(DataTransferSaslUtil.java:217)
          at org.apache.hadoop.hdfs.protocol.datatransfer.sasl.SaslDataTransferServer.doSaslHandshake(SaslDataTransferServer.java:364)
          at org.apache.hadoop.hdfs.protocol.datatransfer.sasl.SaslDataTransferServer.getEncryptedStreams(SaslDataTransferServer.java:178)
          at org.apache.hadoop.hdfs.protocol.datatransfer.sasl.SaslDataTransferServer.receive(SaslDataTransferServer.java:110)
          at org.apache.hadoop.hdfs.server.datanode.DataXceiver.run(DataXceiver.java:193)
          at java.lang.Thread.run(Thread.java:745)

Thanks,
Clark

´╗┐On 7/23/20, 6:15 PM, "Paul Rogers" <par0328@gmail.com> wrote:
    
    Hi Clark,
    
    Security was going to be my next question. The stack trace didn't look like
    one where the file open would fail: the planner doesn't actually open a
    JSON file. There is no indication of the HDFS call that might have failed.
    Another question is: what version of HDFS are you using? I wonder if there
    is a conflict somewhere.
    
    Although the stack trace does not tell us which file-system call failed,
    the logs might. Can you check your Drill log file for entries at the time
    of failure? Is there additional information about the specific operation
    which failed?
    
    What happens if you try to download the file using the command line HDFS
    tools? Does that work? This test might verify that HDFS itself is sane and
    that the security settings work.
    
    Setting up Kerberos in Drill is documented on the web site. You probably
    went through the steps there to ensure Drill has the needed info?
    
    Thanks,
    
    - Paul
    
    On Thu, Jul 23, 2020 at 11:26 AM Updike, Clark <Clark.Updike@jhuapl.edu>
    wrote:
    
    > I should mention that this is a kerberized HDFS cluster.  I'm still not
    > sure why the SHOW FILES would work but the query would not--but it could be
    > behind the issue somehow.
    >
    > On 7/23/20, 2:18 PM, "Updike, Clark" <Clark.Updike@jhuapl.edu> wrote:
    >
    >     No change unfortunately:
    >
    >     apache drill> select * from hdfs.`root`.`/tmp/employee.json`;
    >     Error: VALIDATION ERROR: From line 1, column 15 to line 1, column 18:
    > Object '/tmp/employee.json' not found within 'hdfs.root'
    >
    >     On 7/23/20, 2:11 PM, "Paul Rogers" <par0328@gmail.com> wrote:
    >
    >         Hi Clark,
    >
    >         Try using `hdfs`.`root` rather than `hdfs.root`. Calcite wants to
    > walk down
    >         `hdfs` then `root`. There is no workspace called `hdfs.root`.
    >
    >         Thanks,
    >
    >         - Paul
    >
    >         On Thu, Jul 23, 2020 at 8:58 AM Updike, Clark <
    > Clark.Updike@jhuapl.edu>
    >         wrote:
    >
    >         > Oops, sorry.  No luck there either unfortunately:
    >         >
    >         > apache drill> SELECT * FROM hdfs.`/tmp/employee.json`;
    >         > Error: VALIDATION ERROR: From line 1, column 15 to line 1,
    > column 18:
    >         > Object '/tmp/employee.json' not found within 'hdfs'
    >         >
    >         >
    >         > On 7/23/20, 11:52 AM, "Charles Givre" <cgivre@gmail.com> wrote:
    >         >
    >         >     Oh.. I meant:
    >         >
    >         >     SELECT *
    >         >     FROM hdfs.`/tmp/employee.json`
    >         >
    >         >     > On Jul 23, 2020, at 11:41 AM, Updike, Clark <
    > Clark.Updike@jhuapl.edu>
    >         > wrote:
    >         >     >
    >         >     > No change unfortunately...
    >         >     >
    >         >     > $ hdfs dfs -ls hdfs://nn01:8020/tmp/employee.json
    >         >     > -rw-r--r--   2 me supergroup     474630 2020-07-23 10:53
    >         > hdfs://nn01:8020/tmp/employee.json
    >         >     >
    >         >     > apache drill> select * from
    >         > hdfs.root.`hdfs://nn01:8020/tmp/employee.json`;
    >         >     > Error: VALIDATION ERROR: From line 1, column 15 to line 1,
    > column
    >         > 18: Object 'hdfs://nn01:8020/tmp/employee.json' not found within
    > 'hdfs.root'
    >         >     >
    >         >     >
    >         >     > On 7/23/20, 11:30 AM, "Charles Givre" <cgivre@gmail.com>
    > wrote:
    >         >     >
    >         >     >    Hi Clark,
    >         >     >    That's strange.  My initial thought is that this could
    > be a
    >         > permission issue.  However, it might also be that Drill isn't
    > finding the
    >         > file for some reason.
    >         >     >
    >         >     >    Could you try:
    >         >     >
    >         >     >    SELECT *
    >         >     >    FROM hdfs.`<full hdfs path to file>`
    >         >     >
    >         >     >    Best,
    >         >     >    --- C
    >         >     >
    >         >     >
    >         >     >> On Jul 23, 2020, at 11:23 AM, Updike, Clark <
    >         > Clark.Updike@jhuapl.edu> wrote:
    >         >     >>
    >         >     >> This is in 1.17.  I can use SHOW FILES to list the file
    > I'm
    >         > targeting, but I cannot query it:
    >         >     >>
    >         >     >> apache drill> show files in
    > hdfs.root.`/tmp/employee.json`;
    >         >     >>
    >         >
    > +---------------+-------------+--------+--------+----------+------------+-------------+-------------------------+-------------------------+
    >         >     >> |     name      | isDirectory | isFile | length |  owner
    >  |
    >         >  group    | permissions |       accessTime        |
    > modificationTime
    >         >  |
    >         >     >>
    >         >
    > +---------------+-------------+--------+--------+----------+------------+-------------+-------------------------+-------------------------+
    >         >     >> | employee.json | false       | true   | 474630 | me
    >  |
    >         > supergroup | rw-r--r--   | 2020-07-23 10:53:15.055 | 2020-07-23
    >         > 10:53:15.387 |
    >         >     >>
    >         >
    > +---------------+-------------+--------+--------+----------+------------+-------------+-------------------------+-------------------------+
    >         >     >> 1 row selected (3.039 seconds)
    >         >     >>
    >         >     >>
    >         >     >> apache drill> select * from
    > hdfs.root.`/tmp/employee.json`;
    >         >     >> Error: VALIDATION ERROR: From line 1, column 15 to line
    > 1, column
    >         > 18: Object '/tmp/employee.json' not found within 'hdfs.root'
    >         >     >> [Error Id: 3b833622-4fac-4ecc-becd-118291cd8560 ]
    > (state=,code=0)
    >         >     >>
    >         >     >> The storage plugin uses the standard json config:
    >         >     >>
    >         >     >>   "json": {
    >         >     >>     "type": "json",
    >         >     >>     "extensions": [
    >         >     >>       "json"
    >         >     >>     ]
    >         >     >>   },
    >         >     >>
    >         >     >> I can't see any problems on the HDFS side.  Full stack
    > trace is
    >         > below.
    >         >     >>
    >         >     >> Any ideas what could be causing this behavior?
    >         >     >>
    >         >     >> Thanks, Clark
    >         >     >>
    >         >     >>
    >         >     >>
    >         >     >> FULL STACKTRACE:
    >         >     >>
    >         >     >> apache drill> select * from
    > hdfs.root.`/tmp/employee.json`;
    >         >     >> Error: VALIDATION ERROR: From line 1, column 15 to line
    > 1, column
    >         > 18: Object '/tmp/employee.json' not found within 'hdfs.root'
    >         >     >>
    >         >     >>
    >         >     >> [Error Id: 69c8ffc0-4933-4008-a786-85ad623578ea ]
    >         >     >>
    >         >     >> (org.apache.calcite.runtime.CalciteContextException) From
    > line 1,
    >         > column 15 to line 1, column 18: Object '/tmp/employee.json' not
    > found
    >         > within 'hdfs.root'
    >         >     >>
    >  sun.reflect.NativeConstructorAccessorImpl.newInstance0():-2
    >         >     >>
    >  sun.reflect.NativeConstructorAccessorImpl.newInstance():62
    >         >     >>
    >  sun.reflect.DelegatingConstructorAccessorImpl.newInstance():45
    >         >     >>   java.lang.reflect.Constructor.newInstance():423
    >         >     >>
    >  org.apache.calcite.runtime.Resources$ExInstWithCause.ex():463
    >         >     >>   org.apache.calcite.sql.SqlUtil.newContextException():824
    >         >     >>   org.apache.calcite.sql.SqlUtil.newContextException():809
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.newValidationError():4805
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.IdentifierNamespace.resolveImpl():127
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.IdentifierNamespace.validateImpl():177
    >         >     >>
    >  org.apache.calcite.sql.validate.AbstractNamespace.validate():84
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateNamespace():995
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateQuery():955
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateFrom():3109
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.SqlConverter$DrillValidator.validateFrom():298
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateFrom():3091
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.SqlConverter$DrillValidator.validateFrom():298
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateSelect():3363
    >         >     >>
    >  org.apache.calcite.sql.validate.SelectNamespace.validateImpl():60
    >         >     >>
    >  org.apache.calcite.sql.validate.AbstractNamespace.validate():84
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateNamespace():995
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateQuery():955
    >         >     >>   org.apache.calcite.sql.SqlSelect.validate():216
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateScopedExpression():930
    >         >     >>
    >  org.apache.calcite.sql.validate.SqlValidatorImpl.validate():637
    >         >     >>
    >  org.apache.drill.exec.planner.sql.SqlConverter.validate():218
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.validateNode():665
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.validateAndConvert():199
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.getPlan():172
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.DrillSqlWorker.getQueryPlan():282
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.DrillSqlWorker.getPhysicalPlan():162
    >         >     >>
    >  org.apache.drill.exec.planner.sql.DrillSqlWorker.convertPlan():127
    >         >     >>
    >  org.apache.drill.exec.planner.sql.DrillSqlWorker.getPlan():92
    >         >     >>   org.apache.drill.exec.work.foreman.Foreman.runSQL():590
    >         >     >>   org.apache.drill.exec.work.foreman.Foreman.run():275
    >         >     >>   java.util.concurrent.ThreadPoolExecutor.runWorker():1142
    >         >     >>   java.util.concurrent.ThreadPoolExecutor$Worker.run():617
    >         >     >>   java.lang.Thread.run():745
    >         >     >> Caused By
    > (org.apache.calcite.sql.validate.SqlValidatorException)
    >         > Object '/tmp/employee.json' not found within 'hdfs.root'
    >         >     >>
    >  sun.reflect.NativeConstructorAccessorImpl.newInstance0():-2
    >         >     >>
    >  sun.reflect.NativeConstructorAccessorImpl.newInstance():62
    >         >     >>
    >  sun.reflect.DelegatingConstructorAccessorImpl.newInstance():45
    >         >     >>   java.lang.reflect.Constructor.newInstance():423
    >         >     >>
    >  org.apache.calcite.runtime.Resources$ExInstWithCause.ex():463
    >         >     >>   org.apache.calcite.runtime.Resources$ExInst.ex():572
    >         >     >>   org.apache.calcite.sql.SqlUtil.newContextException():824
    >         >     >>   org.apache.calcite.sql.SqlUtil.newContextException():809
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.newValidationError():4805
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.IdentifierNamespace.resolveImpl():127
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.IdentifierNamespace.validateImpl():177
    >         >     >>
    >  org.apache.calcite.sql.validate.AbstractNamespace.validate():84
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateNamespace():995
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateQuery():955
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateFrom():3109
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.SqlConverter$DrillValidator.validateFrom():298
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateFrom():3091
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.SqlConverter$DrillValidator.validateFrom():298
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateSelect():3363
    >         >     >>
    >  org.apache.calcite.sql.validate.SelectNamespace.validateImpl():60
    >         >     >>
    >  org.apache.calcite.sql.validate.AbstractNamespace.validate():84
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateNamespace():995
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateQuery():955
    >         >     >>   org.apache.calcite.sql.SqlSelect.validate():216
    >         >     >>
    >         >
    > org.apache.calcite.sql.validate.SqlValidatorImpl.validateScopedExpression():930
    >         >     >>
    >  org.apache.calcite.sql.validate.SqlValidatorImpl.validate():637
    >         >     >>
    >  org.apache.drill.exec.planner.sql.SqlConverter.validate():218
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.validateNode():665
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.validateAndConvert():199
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.handlers.DefaultSqlHandler.getPlan():172
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.DrillSqlWorker.getQueryPlan():282
    >         >     >>
    >         >
    > org.apache.drill.exec.planner.sql.DrillSqlWorker.getPhysicalPlan():162
    >         >     >>
    >  org.apache.drill.exec.planner.sql.DrillSqlWorker.convertPlan():127
    >         >     >>
    >  org.apache.drill.exec.planner.sql.DrillSqlWorker.getPlan():92
    >         >     >>   org.apache.drill.exec.work.foreman.Foreman.runSQL():590
    >         >     >>   org.apache.drill.exec.work.foreman.Foreman.run():275
    >         >     >>   java.util.concurrent.ThreadPoolExecutor.runWorker():1142
    >         >     >>   java.util.concurrent.ThreadPoolExecutor$Worker.run():617
    >         >     >>   java.lang.Thread.run():745 (state=,code=0)
    >         >     >
    >         >     >
    >         >     >
    >         >
    >         >
    >         >
    >         >
    >
    >
    >
    >
    >
    

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