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From Michael Dürig (JIRA) <j...@apache.org>
Subject [jira] [Updated] (OAK-3179) Deadlock between persisted compaction map and cleanup
Date Fri, 11 Dec 2015 11:26:11 GMT

     [ https://issues.apache.org/jira/browse/OAK-3179?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Michael Dürig updated OAK-3179:
-------------------------------
    Labels: candidate_oak_1_0 candidate_oak_1_2 cleanup compaction gc  (was: cleanup compaction
gc)

> Deadlock between persisted compaction map and cleanup
> -----------------------------------------------------
>
>                 Key: OAK-3179
>                 URL: https://issues.apache.org/jira/browse/OAK-3179
>             Project: Jackrabbit Oak
>          Issue Type: Bug
>          Components: segmentmk
>            Reporter: Michael Dürig
>            Assignee: Michael Dürig
>            Priority: Critical
>              Labels: candidate_oak_1_0, candidate_oak_1_2, cleanup, compaction, gc
>             Fix For: 1.3.4
>
>
> Just seen this deadlock while running {{SegmentCompactionIT}}:
> {noformat}
> "TarMK flush thread [target/SegmentCompactionIT3250704011919039778dir], active since
Wed Aug 05 09:25:57 GMT+00:00 2015, previous max duration 2325ms" daemon prio=10 tid=0x00007f5674872800
nid=0x5dc8 waiting for monitor entry [0x00007f5666a00000]
>    java.lang.Thread.State: BLOCKED (on object monitor)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentId.getSegment(SegmentId.java:145)
> 	- waiting to lock <0x0000000707fc7fe8> (a org.apache.jackrabbit.oak.plugins.segment.SegmentId)
> 	at org.apache.jackrabbit.oak.plugins.segment.Record.getSegment(Record.java:82)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:154)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:186)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:186)
> 	at org.apache.jackrabbit.oak.plugins.segment.PersistedCompactionMap.compress(PersistedCompactionMap.java:204)
> 	at org.apache.jackrabbit.oak.plugins.segment.PersistedCompactionMap.remove(PersistedCompactionMap.java:155)
> 	at org.apache.jackrabbit.oak.plugins.segment.CompactionMap.remove(CompactionMap.java:108)
> 	at org.apache.jackrabbit.oak.plugins.segment.file.FileStore.cleanup(FileStore.java:694)
> 	- locked <0x000000070017b330> (a org.apache.jackrabbit.oak.plugins.segment.file.FileStore)
> 	at org.apache.jackrabbit.oak.plugins.segment.file.FileStore.flush(FileStore.java:628)
> 	- locked <0x000000070017b330> (a org.apache.jackrabbit.oak.plugins.segment.file.FileStore)
> 	- locked <0x00000007000aed60> (a java.util.concurrent.atomic.AtomicReference)
> 	at org.apache.jackrabbit.oak.plugins.segment.file.FileStore$1.run(FileStore.java:413)
> 	at java.lang.Thread.run(Thread.java:745)
> 	at org.apache.jackrabbit.oak.plugins.segment.file.BackgroundThread.run(BackgroundThread.java:70)
> "pool-1-thread-34" prio=10 tid=0x00007f55ec002800 nid=0x5dea waiting for monitor entry
[0x00007f56648de000]
>    java.lang.Thread.State: BLOCKED (on object monitor)
> 	at org.apache.jackrabbit.oak.plugins.segment.file.FileStore.readSegment(FileStore.java:904)
> 	- waiting to lock <0x000000070017b330> (a org.apache.jackrabbit.oak.plugins.segment.file.FileStore)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentTracker.readSegment(SegmentTracker.java:210)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentId.getSegment(SegmentId.java:149)
> 	- locked <0x0000000707fc7fe8> (a org.apache.jackrabbit.oak.plugins.segment.SegmentId)
> 	at org.apache.jackrabbit.oak.plugins.segment.Segment.readString(Segment.java:400)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:215)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:186)
> 	at org.apache.jackrabbit.oak.plugins.segment.MapRecord.getEntry(MapRecord.java:186)
> 	at org.apache.jackrabbit.oak.plugins.segment.PersistedCompactionMap.get(PersistedCompactionMap.java:121)
> 	at org.apache.jackrabbit.oak.plugins.segment.PersistedCompactionMap.get(PersistedCompactionMap.java:103)
> 	at org.apache.jackrabbit.oak.plugins.segment.CompactionMap.get(CompactionMap.java:93)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.uncompact(SegmentWriter.java:1074)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1098)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1154)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1154)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1154)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter$2.childNodeChanged(SegmentWriter.java:1135)
> 	at org.apache.jackrabbit.oak.plugins.memory.ModifiedNodeState.compareAgainstBaseState(ModifiedNodeState.java:399)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentWriter.writeNode(SegmentWriter.java:1126)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentNodeBuilder.getNodeState(SegmentNodeBuilder.java:100)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentNodeStore$Commit.<init>(SegmentNodeStore.java:418)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentNodeStore.merge(SegmentNodeStore.java:204)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentCompactionIT$RandomWriter.call(SegmentCompactionIT.java:433)
> 	at org.apache.jackrabbit.oak.plugins.segment.SegmentCompactionIT$RandomWriter.call(SegmentCompactionIT.java:406)
> 	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> 	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:471)
> 	at java.util.concurrent.FutureTask.run(FutureTask.java:262)
> 	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:178)
> 	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:292)
> 	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> 	at java.lang.Thread.run(Thread.java:745)
> {noformat}



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