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From "David Snowsill (Jira)" <j...@apache.org>
Subject [jira] [Updated] (OAK-9112) High CPU IOWAIT on Mongo due to Oak background task
Date Mon, 15 Jun 2020 18:48:00 GMT

     [ https://issues.apache.org/jira/browse/OAK-9112?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

David Snowsill updated OAK-9112:
--------------------------------
    Description: 
Over the previous weekend, our existing application went from having 100,000 documents in
the "nodes" collection to 600,000 documents in the "nodes" collection. Since that time there
appears to be an Oak background task that commences running near 100% CPU IOWAIT and heavy
disk activity (read only). Please refer to charts below

!image-2020-06-15-19-41-04-852.png!


!image-2020-06-15-19-41-40-385.png!

According to currentOp Mongo command, the queries being running look as follows:

{code}

{ desc: "conn4944", threadId: "140061124310784", connectionId: 4944, client: "18.207.114.70:47008",
clientMetadata: \{ driver: { name: "mongo-java-driver", version: "unknown" }, os: \{ type:
"Linux", name: "Linux", architecture: "amd64", version: "4.4.115-k8s" }, platform: "Java/IcedTea/1.8.0_212-b04"
}, active: true, opid: 2215767, secs_running: 2, microsecs_running: \{ "$numberLong": "2280333"
}, op: "query", ns: "prod-content-service.nodes", query: \{ find: "nodes", filter: { _id:
"2:/prod/18d6b4d0-9ee8-4a06-804e-b3669f67dda8" }, limit: 1, singleBatch: true }, planSummary:
"IDHACK", numYields: 0, locks: \{ Global: "r", Database: "r", Collection: "r" }, waitingForLock:
false, lockStats: \{ Global: { acquireCount: { r: { "$numberLong": "2" } } }, Database: \{
acquireCount: { r: { "$numberLong": "1" } } }, Collection: \{ acquireCount: { r: { "$numberLong":
"1" } } } } }
{code}


and appears to be iterating over the entire collection.

Can anyone provide any guidance on what is happening?

  was:
Over the previous weekend, our existing application went from having 100,000 documents in
the "nodes" collection to 600,000 documents in the "nodes" collection. Since that time there
appears to be an Oak background task that commences running near 100% CPU IOWAIT and heavy
disk activity (read only). Please refer to charts below

!image-2020-06-15-19-41-04-852.png!


!image-2020-06-15-19-41-40-385.png!

According to currentOp Mongo command, the queries being running look as follows:
{ desc: "conn4944", threadId: "140061124310784", connectionId: 4944, client: "18.207.114.70:47008",
clientMetadata: \{ driver: { name: "mongo-java-driver", version: "unknown" }, os: \{ type:
"Linux", name: "Linux", architecture: "amd64", version: "4.4.115-k8s" }, platform: "Java/IcedTea/1.8.0_212-b04"
}, active: true, opid: 2215767, secs_running: 2, microsecs_running: \{ "$numberLong": "2280333"
}, op: "query", ns: "prod-content-service.nodes", query: \{ find: "nodes", filter: { _id:
"2:/prod/18d6b4d0-9ee8-4a06-804e-b3669f67dda8" }, limit: 1, singleBatch: true }, planSummary:
"IDHACK", numYields: 0, locks: \{ Global: "r", Database: "r", Collection: "r" }, waitingForLock:
false, lockStats: \{ Global: { acquireCount: { r: { "$numberLong": "2" } } }, Database: \{
acquireCount: { r: { "$numberLong": "1" } } }, Collection: \{ acquireCount: { r: { "$numberLong":
"1" } } } } }
and appears to be iterating over the entire collection.

Can anyone provide any guidance on what is happening?


> High CPU IOWAIT on Mongo due to Oak background task
> ---------------------------------------------------
>
>                 Key: OAK-9112
>                 URL: https://issues.apache.org/jira/browse/OAK-9112
>             Project: Jackrabbit Oak
>          Issue Type: Bug
>          Components: mongomk
>    Affects Versions: 1.8.22
>         Environment: Mongo: 3.4.9
> Hosteding: Scalegrid
> Instance Size: Small
>            Reporter: David Snowsill
>            Priority: Major
>             Fix For: 1.8.22
>
>         Attachments: image-2020-06-15-19-41-04-852.png, image-2020-06-15-19-41-40-385.png
>
>
> Over the previous weekend, our existing application went from having 100,000 documents
in the "nodes" collection to 600,000 documents in the "nodes" collection. Since that time
there appears to be an Oak background task that commences running near 100% CPU IOWAIT and
heavy disk activity (read only). Please refer to charts below
> !image-2020-06-15-19-41-04-852.png!
> !image-2020-06-15-19-41-40-385.png!
> According to currentOp Mongo command, the queries being running look as follows:
> {code}
> { desc: "conn4944", threadId: "140061124310784", connectionId: 4944, client: "18.207.114.70:47008",
clientMetadata: \{ driver: { name: "mongo-java-driver", version: "unknown" }, os: \{ type:
"Linux", name: "Linux", architecture: "amd64", version: "4.4.115-k8s" }, platform: "Java/IcedTea/1.8.0_212-b04"
}, active: true, opid: 2215767, secs_running: 2, microsecs_running: \{ "$numberLong": "2280333"
}, op: "query", ns: "prod-content-service.nodes", query: \{ find: "nodes", filter: { _id:
"2:/prod/18d6b4d0-9ee8-4a06-804e-b3669f67dda8" }, limit: 1, singleBatch: true }, planSummary:
"IDHACK", numYields: 0, locks: \{ Global: "r", Database: "r", Collection: "r" }, waitingForLock:
false, lockStats: \{ Global: { acquireCount: { r: { "$numberLong": "2" } } }, Database: \{
acquireCount: { r: { "$numberLong": "1" } } }, Collection: \{ acquireCount: { r: { "$numberLong":
"1" } } } } }
> {code}
> and appears to be iterating over the entire collection.
> Can anyone provide any guidance on what is happening?



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