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From Mark Wilson <...@sanger.ac.uk>
Subject Solr 4.3.0 Cloud Issue indexing pdf documents
Date Fri, 07 Jun 2013 15:31:24 GMT
Hi

I am having an issue with adding pdf documents to a SolrCloud index I have
setup.

I can index pdf documents fine using 4.3.0 on my local box, but I have a
SolrCloud instance setup on the Amazon Cloud (Using 2 servers) and I get
Error.

It seems that it is not loading org.apache.pdfbox.pdmodel.PDPage. However,
the jar is in the directory, and referenced in the solrconfig.xml file

  <lib dir="/www/solr/lib/contrib/extraction/lib" regex=".*\.jar" />
  <lib dir="/www/solr/lib/" regex="solr-cell-\d.*\.jar" />

  <lib dir="/www/solr/lib/contrib/clustering/lib/" regex=".*\.jar" />
  <lib dir="/www/solr/lib/" regex="solr-clustering-\d.*\.jar" />

  <lib dir="/www/solr/lib/contrib/langid/lib/" regex=".*\.jar" />
  <lib dir="/www/solr/lib/" regex="solr-langid-\d.*\.jar" />

  <lib dir="/www/solr/lib/contrib/velocity/lib" regex=".*\.jar" />
  <lib dir="/www/solr/lib/" regex="solr-velocity-\d.*\.jar" />

When I start Tomcat, I can see that the file has loaded.

2705 [coreLoadExecutor-4-thread-3] INFO
org.apache.solr.core.SolrResourceLoader  ­ Adding
'file:/www/solr/lib/contrib/extraction/lib/pdfbox-1.7.1.jar' to classloader

But when I try to add a document.

java 
-Durl=http://ec2-blah-blaheu-west-1.compute.amazonaws.com:8080/solr/quosa2-c
ollection/update/extract -Dparams=literal.id=pdf1 -Dtype=text/pdf -jar
post.jar 2008.Genomics.pdf


I get this error. I¹m running on an Ubuntu machine.

Linux ip-10-229-125-163 3.5.0-21-generic #32-Ubuntu SMP Tue Dec 11 18:51:59
UTC 2012 x86_64 x86_64 x86_64 GNU/Linux

Error log.

88168 [http-bio-8080-exec-1] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract
params={literal.id=pdf1} {} 0 1534
88180 [http-bio-8080-exec-1] ERROR
org.apache.solr.servlet.SolrDispatchFilter  ­
null:java.lang.RuntimeException: java.lang.UnsatisfiedLinkError:
/usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: libXrender.so.1:
cannot open shared object file: No such file or directory
    at 
org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java
:670)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
380)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
155)
    at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application
FilterChain.java:243)
    at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh
ain.java:210)
    at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja
va:222)
    at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja
va:123)
    at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171
)
    at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
    at 
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
    at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java
:118)
    at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
    at 
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce
ssor.java:1009)
    at 
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac
tProtocol.java:589)
    at 
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:
310)
    at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11
45)
    at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6
15)
    at java.lang.Thread.run(Thread.java:722)
Caused by: java.lang.UnsatisfiedLinkError:
/usr/lib/jvm/java-7-oracle/jre/lib/amd64/xawt/libmawt.so: libXrender.so.1:
cannot open shared object file: No such file or directory
    at java.lang.ClassLoader$NativeLibrary.load(Native Method)
    at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939)
    at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864)
    at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1825)
    at java.lang.Runtime.load0(Runtime.java:792)
    at java.lang.System.load(System.java:1059)
    at java.lang.ClassLoader$NativeLibrary.load(Native Method)
    at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1939)
    at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1864)
    at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1846)
    at java.lang.Runtime.loadLibrary0(Runtime.java:845)
    at java.lang.System.loadLibrary(System.java:1084)
    at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:67)
    at sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:47)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.awt.Toolkit.loadLibraries(Toolkit.java:1648)
    at java.awt.Toolkit.<clinit>(Toolkit.java:1670)
    at java.awt.Color.<clinit>(Color.java:275)
    at org.apache.pdfbox.pdmodel.PDPage.<clinit>(PDPage.java:72)
    at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212)
    at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184)
    at 
org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja
va:211)
    at 
org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328)
    at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72)
    at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
    at 
org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242)
    at 
org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242)
    at 
org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
    at 
org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD
ocumentLoader.java:219)
    at 
org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt
reamHandlerBase.java:74)
    at 
org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.
java:135)
    at 
org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest
(RequestHandlers.java:242)
    at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816)
    at 
org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6
56)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
359)
    ... 16 more

88234 [http-bio-8080-exec-2] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
88268 [http-bio-8080-exec-2] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard1_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_15,generation=41,filenames=[segments_15]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard1_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16]
88268 [http-bio-8080-exec-2] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 42[segments_16]
88269 [http-bio-8080-exec-2] INFO  org.apache.solr.search.SolrIndexSearcher
­ Opening Searcher@6175f8cb main
88270 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@6175f8cb
main{StandardDirectoryReader(segments_15:9:nrt)}
88271 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
88273 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard1_replica1] Registered new searcher
Searcher@6175f8cb main{StandardDirectoryReader(segments_15:9:nrt)}
88273 [http-bio-8080-exec-2] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
88288 [http-bio-8080-exec-2] INFO  org.apache.solr.update.SolrCmdDistributor
­ Distrib commit to:[StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, StdNode:
http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, StdNode:
http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/]
params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true&
expungeDeletes=false
88321 [http-bio-8080-exec-3] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
88334 [http-bio-8080-exec-4] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
88351 [http-bio-8080-exec-3] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard2_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard2_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a]
88354 [http-bio-8080-exec-3] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 46[segments_1a]
88357 [http-bio-8080-exec-3] INFO  org.apache.solr.search.SolrIndexSearcher
­ Opening Searcher@775f6084 main
88360 [http-bio-8080-exec-4] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard3_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_19,generation=45,filenames=[segments_19]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard3_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a]
88362 [http-bio-8080-exec-4] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 46[segments_1a]
88363 [http-bio-8080-exec-4] INFO  org.apache.solr.search.SolrIndexSearcher
­ Opening Searcher@4a2415c5 main
88364 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@4a2415c5
main{StandardDirectoryReader(segments_19:1:nrt)}
88365 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
88367 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard3_replica1] Registered new searcher
Searcher@4a2415c5 main{StandardDirectoryReader(segments_19:1:nrt)}
88367 [http-bio-8080-exec-4] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
88368 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@775f6084
main{StandardDirectoryReader(segments_19:1:nrt)}
88368 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
88367 [http-bio-8080-exec-4] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard3_replica1] webapp=/solr path=/update
params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit
_end_point=true&version=2&softCommit=false} {commit=} 0 33
88371 [http-bio-8080-exec-3] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
88370 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard2_replica1] Registered new searcher
Searcher@775f6084 main{StandardDirectoryReader(segments_19:1:nrt)}
88376 [http-bio-8080-exec-3] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard2_replica1] webapp=/solr path=/update
params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit
_end_point=true&version=2&softCommit=false} {commit=} 0 55
88379 [http-bio-8080-exec-2] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract
params={commit=true&literal.id=pdf1} {commit=} 0 149


When I try to add the file again, I get another error.

SimplePostTool version 1.5
Posting files to base url
http://server:8080/solr/quosa2-collection/update/extract?literal.id=pdf1
using content-type text/pdf..
POSTing file 2008.Genomics.pdf
SimplePostTool: WARNING: Solr returned an error #500 Internal Server Error
SimplePostTool: WARNING: IOException while reading response:
java.io.IOException: Server returned HTTP response code: 500 for URL:
http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co
llection/update/extract?literal.id=pdf1
1 files indexed.
COMMITting Solr index changes to
http://ec2-54-228-131-56.eu-west-1.compute.amazonaws.com:8080/solr/quosa2-co
llection/update/extract?literal.id=pdf1..
Time spent: 0:00:00.341

Error Log

731088 [http-bio-8080-exec-8] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract
params={literal.id=pdf1} {} 0 170
731094 [http-bio-8080-exec-8] ERROR
org.apache.solr.servlet.SolrDispatchFilter  ­
null:java.lang.RuntimeException: java.lang.NoClassDefFoundError: Could not
initialize class org.apache.pdfbox.pdmodel.PDPage
    at 
org.apache.solr.servlet.SolrDispatchFilter.sendError(SolrDispatchFilter.java
:670)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
380)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
155)
    at 
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(Application
FilterChain.java:243)
    at 
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterCh
ain.java:210)
    at 
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.ja
va:222)
    at 
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.ja
va:123)
    at 
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171
)
    at 
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
    at 
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:947)
    at 
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java
:118)
    at 
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
    at 
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Proce
ssor.java:1009)
    at 
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(Abstrac
tProtocol.java:589)
    at 
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:
310)
    at 
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:11
45)
    at 
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:6
15)
    at java.lang.Thread.run(Thread.java:722)
Caused by: java.lang.NoClassDefFoundError: Could not initialize class
org.apache.pdfbox.pdmodel.PDPage
    at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:212)
    at org.apache.pdfbox.pdmodel.PDPageNode.getAllKids(PDPageNode.java:184)
    at 
org.apache.pdfbox.pdmodel.PDDocumentCatalog.getAllPages(PDDocumentCatalog.ja
va:211)
    at 
org.apache.pdfbox.util.PDFTextStripper.writeText(PDFTextStripper.java:328)
    at org.apache.tika.parser.pdf.PDF2XHTML.process(PDF2XHTML.java:72)
    at org.apache.tika.parser.pdf.PDFParser.parse(PDFParser.java:153)
    at 
org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242)
    at 
org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:242)
    at 
org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:120)
    at 
org.apache.solr.handler.extraction.ExtractingDocumentLoader.load(ExtractingD
ocumentLoader.java:219)
    at 
org.apache.solr.handler.ContentStreamHandlerBase.handleRequestBody(ContentSt
reamHandlerBase.java:74)
    at 
org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.
java:135)
    at 
org.apache.solr.core.RequestHandlers$LazyRequestHandlerWrapper.handleRequest
(RequestHandlers.java:242)
    at org.apache.solr.core.SolrCore.execute(SolrCore.java:1816)
    at 
org.apache.solr.servlet.SolrDispatchFilter.execute(SolrDispatchFilter.java:6
56)
    at 
org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:
359)
    ... 16 more

731110 [http-bio-8080-exec-9] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
731143 [http-bio-8080-exec-9] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard1_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_16,generation=42,filenames=[segments_16]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard1_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7b2d9e10;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_17,generation=43,filenames=[segments_17]
731144 [http-bio-8080-exec-9] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 43[segments_17]
731145 [http-bio-8080-exec-9] INFO  org.apache.solr.search.SolrIndexSearcher
­ Opening Searcher@64148dd8 main
731146 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@64148dd8
main{StandardDirectoryReader(segments_15:9:nrt)}
731147 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
731148 [searcherExecutor-6-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard1_replica1] Registered new searcher
Searcher@64148dd8 main{StandardDirectoryReader(segments_15:9:nrt)}
731149 [http-bio-8080-exec-9] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
731149 [http-bio-8080-exec-9] INFO
org.apache.solr.update.SolrCmdDistributor  ­ Distrib commit to:[StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard1_replica3/, StdNode:
http://10.229.125.163:8080/solr/quosa2-collection_shard2_replica1/, StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard2_replica3/, StdNode:
http://10.229.125.163:8080/solr/quosa2-collection_shard3_replica1/, StdNode:
http://10.234.215.24:8080/solr/quosa2-collection_shard3_replica3/]
params:commit_end_point=true&commit=true&softCommit=false&waitSearcher=true&
expungeDeletes=false
731170 [http-bio-8080-exec-1] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
731174 [http-bio-8080-exec-10] INFO  org.apache.solr.update.UpdateHandler  ­
start 
commit{,optimize=false,openSearcher=true,waitSearcher=true,expungeDeletes=fa
lse,softCommit=false,prepareCommit=false}
731191 [http-bio-8080-exec-1] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard3_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard3_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@782256a2;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b]
731192 [http-bio-8080-exec-1] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 47[segments_1b]
731192 [http-bio-8080-exec-1] INFO  org.apache.solr.search.SolrIndexSearcher
­ Opening Searcher@49bbdad main
731193 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@49bbdad
main{StandardDirectoryReader(segments_19:1:nrt)}
731200 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
731202 [http-bio-8080-exec-10] INFO  org.apache.solr.core.SolrCore  ­
SolrDeletionPolicy.onCommit: commits:num=2
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard2_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1a,generation=46,filenames=[segments_1a]
    
commit{dir=NRTCachingDirectory(org.apache.lucene.store.MMapDirectory@/www/so
lr/home1/quosa2-collection_shard2_replica1/data/index
lockFactory=org.apache.lucene.store.NativeFSLockFactory@7d5549ce;
maxCacheMB=48.0 
maxMergeSizeMB=4.0),segFN=segments_1b,generation=47,filenames=[segments_1b]
731202 [http-bio-8080-exec-10] INFO  org.apache.solr.core.SolrCore  ­ newest
commit = 47[segments_1b]
731203 [http-bio-8080-exec-10] INFO
org.apache.solr.search.SolrIndexSearcher  ­ Opening Searcher@5ddf50fe main
731193 [http-bio-8080-exec-1] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
731205 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener sending requests to Searcher@5ddf50fe
main{StandardDirectoryReader(segments_19:1:nrt)}
731205 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
QuerySenderListener done.
731207 [searcherExecutor-7-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard2_replica1] Registered new searcher
Searcher@5ddf50fe main{StandardDirectoryReader(segments_19:1:nrt)}
731204 [searcherExecutor-5-thread-1] INFO  org.apache.solr.core.SolrCore  ­
[quosa2-collection_shard3_replica1] Registered new searcher Searcher@49bbdad
main{StandardDirectoryReader(segments_19:1:nrt)}
731207 [http-bio-8080-exec-10] INFO  org.apache.solr.update.UpdateHandler  ­
end_commit_flush
731208 [http-bio-8080-exec-10] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard2_replica1] webapp=/solr path=/update
params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit
_end_point=true&version=2&softCommit=false} {commit=} 0 35
731210 [http-bio-8080-exec-1] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard3_replica1] webapp=/solr path=/update
params={waitSearcher=true&commit=true&wt=javabin&expungeDeletes=false&commit
_end_point=true&version=2&softCommit=false} {commit=} 0 41
731216 [http-bio-8080-exec-9] INFO
org.apache.solr.update.processor.LogUpdateProcessor  ­
[quosa2-collection_shard1_replica1] webapp=/solr path=/update/extract
params={commit=true&literal.id=pdf1} {commit=} 0 106


Does anyone have any idea how to resolve this?

Thanks in advance

Mark





-- 
 The Wellcome Trust Sanger Institute is operated by Genome Research 
 Limited, a charity registered in England with number 1021457 and a 
 company registered in England with number 2742969, whose registered 
 office is 215 Euston Road, London, NW1 2BE. 


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