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From Karl Wright <daddy...@gmail.com>
Subject Re: ElastiSearch missing doc
Date Tue, 16 Dec 2014 15:20:24 GMT
Hi Kamil,

If it happens again, see if you can find an archive file that it happens
on.  It's easy to do that: you just want to drop the file you suspect down
in the file system somewhere, and set up a file system job to crawl that
one file, making sure you send it through the Tika transformer of course.
You can use a null output connection.

If you can reproduce the problem with just that one file, then if you send
me the file I can work with it here and determine whether the problem is
local to your system or is a more general issue.

Thanks,
Karl


On Tue, Dec 16, 2014 at 9:55 AM, Kamil Żyta <kamil.zyta@pwr.edu.pl> wrote:
>
> err, only a few jobs causes a problem (the rest probably does not have
> archives).
> I don't know which files you ask.
>
> K
>
>
> On Tue, Dec 16, 2014 at 03:15:16PM +0100, Kamil Żyta wrote:
> > Ok, I rebuilt mcf and the problem still was so I restart all jobs and no
> problem.
> > Thx Karl for your time.
> >
> > K
> >
> > On Tue, Dec 16, 2014 at 07:28:34AM -0500, Karl Wright wrote:
> > > The commons-compress code just makes a simple reference to the Coder
> class,
> > > with no reflection or anything suspicious going on.
> > >
> > > If you can send me the binary file that causes this issue, I can verify
> > > whether it happens here or not.  (If this seems to happen for you on
> ALL
> > > files, then I can already assure you that it does not happen here, and
> > > you've got something very special happening in your environment.)  If
> this
> > > is not reproducible here then you probably have a corrupt
> commons-compress
> > > jar and need to download it again.  If it *is* reproducible, then
> probably
> > > we will need to create an Oracle Java bug ticket.
> > >
> > > Karl
> > >
> > >
> > >
> > > On Tue, Dec 16, 2014 at 7:17 AM, Karl Wright <daddywri@gmail.com>
> wrote:
> > > >
> > > > Ok, then I don't understand it.  It may be a bug in
> commons-compress, or
> > > > maybe even a bad jar.  I'll have a look at their code and see if I
> can
> > > > figure out why that class won't load.
> > > >
> > > > Karl
> > > >
> > > >
> > > > On Tue, Dec 16, 2014 at 7:06 AM, Kamil Żyta <kamil.zyta@pwr.edu.pl>
> wrote:
> > > >>
> > > >> I use multiprocess-zk-example, external pgsql db and splited war.
> > > >>
> > > >> K
> > > >>
> > > >> On Tue, Dec 16, 2014 at 07:02:47AM -0500, Karl Wright wrote:
> > > >> > Hi Kamil,
> > > >> >
> > > >> > Which example are you using?  is this with the combined war,
or
> is it
> > > >> one
> > > >> > of the multiprocess examples, or is it the single-process quick
> start?
> > > >> >
> > > >> > I really don't have any idea why a class that IS found in a
> particular
> > > >> jar
> > > >> > cannot in turn find another class in the same jar, so I'll need
> as many
> > > >> > details as possible.
> > > >> >
> > > >> > Karl
> > > >> >
> > > >> >
> > > >> > On Tue, Dec 16, 2014 at 6:54 AM, Kamil Żyta <
> kamil.zyta@pwr.edu.pl>
> > > >> wrote:
> > > >> > >
> > > >> > > > find . -iname 'commons-compress*'
> > > >> > > ./lib/commons-compress-1.8.1.jar
> > > >> > > ./dist/lib/commons-compress-1.8.1.jar
> > > >> > > ./framework/dist/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/crawler-ui-proprietary/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/combined-service-proprietary/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/authority-service/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >>
> ./framework/build/webapp/crawler-ui/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >>
> ./framework/build/webapp/api-service/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/combined-service/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/authority-service-proprietary/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > >
> > > >>
> ./framework/build/webapp/api-service-proprietary/WEB-INF/lib/commons-compress-1.8.1.jar
> > > >> > >
> > > >> > > I follow
> > > >> > >
> > > >>
> https://manifoldcf.apache.org/release/trunk/en_US/how-to-build-and-deploy.html#Building+the+framework+and+the+connectors+using+Apache+Ant
> > > >> > > There aren't anything about clean-core-deps. I checkout
fresh
> > > >> > > release-1.8-branch.
> > > >> > >
> > > >> > > K
> > > >> > >
> > > >> > > On Tue, Dec 16, 2014 at 06:38:18AM -0500, Karl Wright wrote:
> > > >> > > > Hi Kamil,
> > > >> > > >
> > > >> > > > I've confirmed that this should not be a classloader
issue.
> The
> > > >> class in
> > > >> > > > question is in commons-compress.jar at the root level
(under
> > > >> dist/lib).
> > > >> > > > The only way this would not be loadable is if you had
TWO
> > > >> > > commons-compress
> > > >> > > > jars in your lib area.  This is possible if you upgraded
to
> mcf 1.8
> > > >> and
> > > >> > > did
> > > >> > > > not do a make clean-core-deps before you did a make-core-deps,
> > > >> because
> > > >> > > now
> > > >> > > > all jars have versions attached to their names.
> > > >> > > >
> > > >> > > > Please confirm you do not have duplicate jars in this
> directory.
> > > >> > > >
> > > >> > > > Thanks,
> > > >> > > > Karl
> > > >> > > >
> > > >> > > >
> > > >> > > > On Tue, Dec 16, 2014 at 6:31 AM, Karl Wright <
> daddywri@gmail.com>
> > > >> wrote:
> > > >> > > > >
> > > >> > > > > Hi Kamil,
> > > >> > > > >
> > > >> > > > > Your problem looks like a potential classloader
issue.  Let
> me do
> > > >> some
> > > >> > > > > research and get back to you.
> > > >> > > > >
> > > >> > > > > Karl
> > > >> > > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > >
> > > >> > > > > On Tue, Dec 16, 2014 at 5:34 AM, Kamil Żyta <
> > > >> kamil.zyta@pwr.edu.pl>
> > > >> > > wrote:
> > > >> > > > >>
> > > >> > > > >> thx Karl but now I have new issue:
> > > >> > > > >>
> > > >> > > > >> FATAL 2014-12-16 11:12:58,496 (Worker thread
'47') - Error
> > > >> tossed:
> > > >> > > Could
> > > >> > > > >> not initialize class
> > > >> > > org.apache.commons.compress.archivers.sevenz.Coders
> > > >> > > > >> java.lang.NoClassDefFoundError: Could not
initialize class
> > > >> > > > >> org.apache.commons.compress.archivers.sevenz.Coders
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.commons.compress.archivers.sevenz.SevenZFile.readEncodedHeader(SevenZFile.java:279)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.commons.compress.archivers.sevenz.SevenZFile.readHeaders(SevenZFile.java:191)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.commons.compress.archivers.sevenz.SevenZFile.<init>(SevenZFile.java:95)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.commons.compress.archivers.sevenz.SevenZFile.<init>(SevenZFile.java:117)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >>
> org.apache.tika.parser.pkg.PackageParser.parse(PackageParser.java:130)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >>
> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:244)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >>
> org.apache.tika.parser.CompositeParser.parse(CompositeParser.java:244)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.tika.parser.AutoDetectParser.parse(AutoDetectParser.java:121)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.agents.transformation.tika.TikaExtractor.addOrReplaceDocumentWithException(TikaExtractor.java:230)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.agents.incrementalingest.IncrementalIngester$PipelineAddEntryPoint.addOrReplaceDocumentWithException(IncrementalIngester.java:3257)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.agents.incrementalingest.IncrementalIngester$PipelineAddFanout.sendDocument(IncrementalIngester.java:3108)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.agents.incrementalingest.IncrementalIngester$PipelineObjectWithVersions.addOrReplaceDocumentWithException(IncrementalIngester.java:2739)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.agents.incrementalingest.IncrementalIngester.documentIngest(IncrementalIngester.java:792)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.crawler.system.WorkerThread$ProcessActivity.ingestDocumentWithException(WorkerThread.java:1610)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.crawler.system.WorkerThread$ProcessActivity.ingestDocumentWithException(WorkerThread.java:1558)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.crawler.connectors.sharedrive.SharedDriveConnector.processDocuments(SharedDriveConnector.java:911)
> > > >> > > > >>         at
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.crawler.system.WorkerThread.run(WorkerThread.java:383)
> > > >> > > > >>
> > > >> > > > >> And another question: I use Solr 4.10 with
Tika 1.5. MCF
> 1.8
> > > >> have tika
> > > >> > > > >> 1.6. How this affect document parsing?
> > > >> > > > >>
> > > >> > > > >> K
> > > >> > > > >>
> > > >> > > > >> On Mon, Dec 15, 2014 at 08:45:31AM -0500,
Karl Wright
> wrote:
> > > >> > > > >> > If you changed this file, you would need
to rerun
> > > >> initialize.sh in
> > > >> > > > >> order to
> > > >> > > > >> > register the connector.
> > > >> > > > >> >
> > > >> > > > >> > Karl
> > > >> > > > >> >
> > > >> > > > >> >
> > > >> > > > >> > On Mon, Dec 15, 2014 at 8:42 AM, Kamil
Żyta <
> > > >> kamil.zyta@pwr.edu.pl>
> > > >> > > > >> wrote:
> > > >> > > > >> > >
> > > >> > > > >> > > the same as connectors.xml:
> > > >> > > > >> > > (...)
> > > >> > > > >> > > <repositoryconnector name="Windows
shares"
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > >
> > > >>
> class="org.apache.manifoldcf.crawler.connectors.sharedrive.SharedDriveConnector"/>
> > > >> > > > >> > > (...)
> > > >> > > > >> > >
> > > >> > > > >> > > K
> > > >> > > > >> > >
> > > >> > > > >> > > On Mon, Dec 15, 2014 at 08:39:07AM
-0500, Karl Wright
> wrote:
> > > >> > > > >> > > > Hi Kamil,
> > > >> > > > >> > > >
> > > >> > > > >> > > > What does connectors-proprietary.xml
say about the
> jcifs
> > > >> > > connector?
> > > >> > > > >> > > >
> > > >> > > > >> > > > Karl
> > > >> > > > >> > > >
> > > >> > > > >> > > >
> > > >> > > > >> > > > On Mon, Dec 15, 2014 at 8:35
AM, Kamil Żyta <
> > > >> > > kamil.zyta@pwr.edu.pl>
> > > >> > > > >> > > wrote:
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > Right, thx. Another problem:
> > > >> > > > >> > > > > >
> > > >> > > > >> > > > >
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > >
> > > >>
> org.apache.manifoldcf.crawler.connectors.sharedrive.SharedDriveConnector(uninstalled)
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > properties.xml:
> > > >> > > > >> > > > > <libdir path="../connector-lib-proprietary"/>
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > > cat ../connectors.xml
> > > >> > > > >> > > > > <repositoryconnector
name="Windows shares"
> > > >> > > > >> > > > >
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > >
> > > >>
> class="org.apache.manifoldcf.crawler.connectors.sharedrive.SharedDriveConnector"/>
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > > ls ../connector-lib-proprietary
> > > >> > > > >> > > > > jcifs.jar
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > I think I checked/restarted
everything.
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > K
> > > >> > > > >> > > > >
> > > >> > > > >> > > > > On Mon, Dec 15, 2014 at
08:00:12AM -0500, Karl
> Wright
> > > >> wrote:
> > > >> > > > >> > > > > > You have to run ./initialize.sh
on the MCF 1.8
> > > >> codebase for
> > > >> > > the
> > > >> > > > >> > > upgrade
> > > >> > > > >> > > > > to
> > > >> > > > >> > > > > > take place.
> > > >> > > > >> > > > > >
> > > >> > > > >> > > > > > Karl
> > > >> > > > >> > > > > >
> > > >> > > > >> > > > > >
> > > >> > > > >> > > > > > On Mon, Dec 15, 2014
at 7:43 AM, Kamil Żyta <
> > > >> > > > >> kamil.zyta@pwr.edu.pl>
> > > >> > > > >> > > > > wrote:
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > > > > With release-1.8-branch
is the same problem.
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > > > > K
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > > > > On Mon, Dec
15, 2014 at 06:47:12AM -0500, Karl
> Wright
> > > >> > > wrote:
> > > >> > > > >> > > > > > > > Hi Kamil,
> > > >> > > > >> > > > > > > >
> > > >> > > > >> > > > > > > > You cannot
upgrade to trunk from 1.x.
> > > >> > > > >> > > > > > > >
> > > >> > > > >> > > > > > > > Try upgrading
to branches/release-1.8-branch.
> > > >> > > > >> > > > > > > >
> > > >> > > > >> > > > > > > > Karl
> > > >> > > > >> > > > > > > >
> > > >> > > > >> > > > > > > >
> > > >> > > > >> > > > > > > > On Mon,
Dec 15, 2014 at 3:39 AM, Kamil Żyta <
> > > >> > > > >> > > kamil.zyta@pwr.edu.pl>
> > > >> > > > >> > > > > > > wrote:
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > > > > Hi,
> > > >> > > > >> > > > > > > > > after
upgrading to trunk I get 'Database
> > > >> exception:
> > > >> > > > >> > > SQLException
> > > >> > > > >> > > > > doing
> > > >> > > > >> > > > > > > > > query
(42703): ERROR: column
> "needpriority" does
> > > >> not
> > > >> > > > >> exist'.
> > > >> > > > >> > > > > > > > > How
can I upgrade db schema? I tried
> > > >> ./initialize.sh
> > > >> > > > >> without
> > > >> > > > >> > > > > success.
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > > > > K
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > > > > On
Fri, Dec 12, 2014 at 10:40:39AM -0500,
> Karl
> > > >> Wright
> > > >> > > > >> wrote:
> > > >> > > > >> > > > > > > > > >
Ok, committed a fix. CONNECTORS-1121.
> > > >> > > > >> > > > > > > > > >
> > > >> > > > >> > > > > > > > > >
Karl
> > > >> > > > >> > > > > > > > > >
> > > >> > > > >> > > > > > > > > >
> > > >> > > > >> > > > > > > > > >
On Fri, Dec 12, 2014 at 10:32 AM, Karl
> Wright <
> > > >> > > > >> > > > > daddywri@gmail.com>
> > > >> > > > >> > > > > > > > > wrote:
> > > >> > > > >> > > > > > > > > >
>
> > > >> > > > >> > > > > > > > > >
> Ah, thanks, this is due to changes I
> made
> > > >> > > yesterday.
> > > >> > > > >> > > > > > > > > >
>
> > > >> > > > >> > > > > > > > > >
> Hold on.
> > > >> > > > >> > > > > > > > > >
> Karl
> > > >> > > > >> > > > > > > > > >
>
> > > >> > > > >> > > > > > > > > >
>
> > > >> > > > >> > > > > > > > > >
> On Fri, Dec 12, 2014 at 10:12 AM,
> Kamil Żyta
> > > >> <
> > > >> > > > >> > > > > > > kamil.zyta@pwr.edu.pl>
> > > >> > > > >> > > > > > > > > >
> wrote:
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > > >
>> On Fri, Dec 12, 2014 at 09:55:41AM
> -0500,
> > > >> Karl
> > > >> > > Wright
> > > >> > > > >> > > wrote:
> > > >> > > > >> > > > > > > > > >
>> > I've created CONNECTORS-1120 for
> this
> > > >> fix.  I
> > > >> > > > >> should
> > > >> > > > >> > > have
> > > >> > > > >> > > > > > > something
> > > >> > > > >> > > > > > > > > to
> > > >> > > > >> > > > > > > > > >
>> try
> > > >> > > > >> > > > > > > > > >
>> > shortly.
> > > >> > > > >> > > > > > > > > >
>> >
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > > >
>> I can't build mcf from source:
> > > >> > > > >> > > > > > > > > >
>> BUILD FAILED
> > > >> > > > >> > > > > > > > > >
>> /opt/mcf-trunk/build.xml:1438: Can't
> get
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > >
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > >
> > > >>
> https://www.apache.org/dist/manifoldcf/apache-manifoldcf-elasticsearch-plugin-2.0-bin.zip
> > > >> > > > >> > > > > > > > > >
>> to
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > >
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > >
> > > >>
> /opt/mcf-trunk/build/download/apache-manifoldcf-elasticsearch-plugin-bin.zip
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > > >
>> K
> > > >> > > > >> > > > > > > > > >
>>
> > > >> > > > >> > > > > > > > > >
>
> > > >> > > > >> > > > > > > > >
> > > >> > > > >> > > > > > >
> > > >> > > > >> > > > >
> > > >> > > > >> > >
> > > >> > > > >>
> > > >> > > > >
> > > >> > >
> > > >>
> > > >
>

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