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From "RJ Nowling (JIRA)" <j...@apache.org>
Subject [jira] [Commented] (SPARK-4816) Maven profile netlib-lgpl does not work
Date Mon, 14 Dec 2015 20:05:46 GMT

    [ https://issues.apache.org/jira/browse/SPARK-4816?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=15056630#comment-15056630
] 

RJ Nowling commented on SPARK-4816:
-----------------------------------

Tried with Maven 3.3.9.  I see no issues with the newer version of Maven:

{code}
$ mvn -version
Apache Maven 3.3.9 (bb52d8502b132ec0a5a3f4c09453c07478323dc5; 2015-11-10T16:41:47+00:00)
Maven home: /root/apache-maven-3.3.9
Java version: 1.7.0_85, vendor: Oracle Corporation
Java home: /usr/lib/jvm/java-1.7.0-openjdk-1.7.0.85-2.6.1.2.el7_1.x86_64/jre
Default locale: en_US, platform encoding: UTF-8
OS name: "linux", version: "3.10.0-229.1.2.el7.x86_64", arch: "amd64", family: "unix"
$ zipinfo -1 assembly/target/scala-2.10/spark-assembly-1.4.1-hadoop2.4.0.jar | grep netlib-native
netlib-native_ref-osx-x86_64.jnilib
netlib-native_ref-osx-x86_64.jnilib.asc
netlib-native_ref-osx-x86_64.pom
netlib-native_ref-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-osx-x86_64/pom.properties
netlib-native_ref-linux-x86_64.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-x86_64/pom.properties
netlib-native_ref-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-i686/pom.properties
netlib-native_ref-win-x86_64.dll
netlib-native_ref-win-x86_64.dll.asc
netlib-native_ref-win-x86_64.pom
netlib-native_ref-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-x86_64/pom.properties
netlib-native_ref-win-i686.dll
netlib-native_ref-win-i686.dll.asc
netlib-native_ref-win-i686.pom
netlib-native_ref-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-win-i686/pom.properties
netlib-native_ref-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_ref-linux-armhf/pom.properties
netlib-native_system-osx-x86_64.jnilib
netlib-native_system-osx-x86_64.jnilib.asc
netlib-native_system-osx-x86_64.pom
netlib-native_system-osx-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-osx-x86_64/pom.properties
netlib-native_system-linux-x86_64.pom.asc
netlib-native_system-linux-x86_64.pom
netlib-native_system-linux-x86_64.so
netlib-native_system-linux-x86_64.so.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-x86_64/pom.properties
netlib-native_system-linux-i686.pom
netlib-native_system-linux-i686.so.asc
netlib-native_system-linux-i686.pom.asc
netlib-native_system-linux-i686.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-i686/pom.properties
netlib-native_system-linux-armhf.pom
netlib-native_system-linux-armhf.so.asc
netlib-native_system-linux-armhf.pom.asc
netlib-native_system-linux-armhf.so
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-linux-armhf/pom.properties
netlib-native_system-win-x86_64.dll
netlib-native_system-win-x86_64.dll.asc
netlib-native_system-win-x86_64.pom
netlib-native_system-win-x86_64.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-x86_64/pom.properties
netlib-native_system-win-i686.dll
netlib-native_system-win-i686.dll.asc
netlib-native_system-win-i686.pom
netlib-native_system-win-i686.pom.asc
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.xml
META-INF/maven/com.github.fommil.netlib/netlib-native_system-win-i686/pom.properties
{code}

Thus, it's likely only a problem with older versions of Maven or its plugins.  Maven 3.0+
is support for Spark 1.4.1 according to the docs.  Even without the commit that fixed the
issue, this probably wouldn't be an issue with 1.5.x+ since they only support Maven 3.3.x+.

> Maven profile netlib-lgpl does not work
> ---------------------------------------
>
>                 Key: SPARK-4816
>                 URL: https://issues.apache.org/jira/browse/SPARK-4816
>             Project: Spark
>          Issue Type: Bug
>          Components: Build
>    Affects Versions: 1.1.0
>         Environment: maven 3.0.5 / Ubuntu
>            Reporter: Guillaume Pitel
>            Priority: Minor
>             Fix For: 1.1.1
>
>
> When doing what the documentation recommends to recompile Spark with Netlib Native system
binding (i.e. to bind with openblas or, in my case, MKL), 
> mvn -Pnetlib-lgpl -Pyarn -Phadoop-2.3 -Dhadoop.version=2.3.0 -DskipTests clean package
> The resulting assembly jar still lacked the netlib-system class. (I checked the content
of spark-assembly...jar)
> When forcing the netlib-lgpl profile in MLLib package to be active, the jar is correctly
built.
> So I guess it's a problem with the way maven passes profiles activitations to children
modules.
> Also, despite the documentation claiming that if the job's jar contains netlib with necessary
bindings, it should works, it does not. The classloader must be unhappy with two occurrences
of netlib ?



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