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From Fawze Abujaber <fawz...@gmail.com>
Subject Re: native-lzo library not available
Date Fri, 04 May 2018 05:39:21 GMT
Hi Yulia,

Thanks for you response.

i see only lzo only for impala

 [root@xxxxxxx ~]# locate *lzo*.so*
/opt/cloudera/parcels/GPLEXTRAS-5.13.0-1.cdh5.13.0.p0.29/lib/impala/lib/libimpalalzo.so
/usr/lib64/liblzo2.so.2
/usr/lib64/liblzo2.so.2.0.0

the /opt/cloudera/parcels/GPLEXTRAS-5.13.0-1.cdh5.13.0.p0.29/lib/hadoop/lib/native
has :

-rwxr-xr-x 1 cloudera-scm cloudera-scm 22918 Oct  4  2017
libgplcompression.a
-rwxr-xr-x 1 cloudera-scm cloudera-scm  1204 Oct  4  2017
libgplcompression.la
-rwxr-xr-x 1 cloudera-scm cloudera-scm  1205 Oct  4  2017
libgplcompression.lai
-rwxr-xr-x 1 cloudera-scm cloudera-scm 15760 Oct  4  2017
libgplcompression.so
-rwxr-xr-x 1 cloudera-scm cloudera-scm 15768 Oct  4  2017
libgplcompression.so.0
-rwxr-xr-x 1 cloudera-scm cloudera-scm 15768 Oct  4  2017
libgplcompression.so.0.0.0


and /opt/cloudera/parcels/GPLEXTRAS-5.13.0-1.cdh5.13.0.p0.29/lib/spark-netlib/lib
has:

-rw-r--r-- 1 cloudera-scm cloudera-scm    8673 Oct  4  2017
jniloader-1.1.jar
-rw-r--r-- 1 cloudera-scm cloudera-scm   53249 Oct  4  2017
native_ref-java-1.1.jar
-rw-r--r-- 1 cloudera-scm cloudera-scm   53295 Oct  4  2017
native_system-java-1.1.jar
-rw-r--r-- 1 cloudera-scm cloudera-scm 1732268 Oct  4  2017
netlib-native_ref-linux-x86_64-1.1-natives.jar
-rw-r--r-- 1 cloudera-scm cloudera-scm  446694 Oct  4  2017
netlib-native_system-linux-x86_64-1.1-natives.jar


Note: The issue occuring only with the spark job, mapreduce job working
fine.

On Thu, May 3, 2018 at 9:17 PM, yuliya Feldman <yufeldman@yahoo.com> wrote:

> Jar is not enough, you need native library (*.so) - see if your "native"
> directory contains it
>
> drwxr-xr-x 2 cloudera-scm cloudera-scm  4096 Oct  4  2017 native
>
> and whether  java.library.path or LD_LIBRARY_PATH points/includes
> directory where your *.so library resides
>
> On Thursday, May 3, 2018, 5:06:35 AM PDT, Fawze Abujaber <
> fawzeaj@gmail.com> wrote:
>
>
> Hi Guys,
>
> I'm running into issue where my spark jobs are failing on the below error,
> I'm using Spark 1.6.0 with CDH 5.13.0.
>
> I tried to figure it out with no success.
>
> Will appreciate any help or a direction how to attack this issue.
>
> User class threw exception: org.apache.spark.SparkException: Job aborted
> due to stage failure: Task 0 in stage 1.0 failed 4 times, most recent
> failure: Lost task 0.3 in stage 1.0 (TID 3, xxxxxx, executor 1): *java.lang.RuntimeException:
> native-lzo library not available*
> *at
> com.hadoop.compression.lzo.LzoCodec.getDecompressorType(LzoCodec.java:193)*
> at org.apache.hadoop.io.compress.CodecPool.getDecompressor(
> CodecPool.java:181)
> at org.apache.hadoop.io.SequenceFile$Reader.init(SequenceFile.java:1995)
> at org.apache.hadoop.io.SequenceFile$Reader.initialize(SequenceFile.java:
> 1881)
> at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1830)
> at org.apache.hadoop.io.SequenceFile$Reader.<init>(SequenceFile.java:1844)
> at org.apache.hadoop.mapreduce.lib.input.SequenceFileRecordReader.
> initialize(SequenceFileRecordReader.java:54)
> at com.liveperson.dallas.lp.utils.incremental.
> DallasGenericTextFileRecordReader.initialize(
> DallasGenericTextFileRecordReader.java:64)
> at com.liveperson.hadoop.fs.inputs.LPCombineFileRecordReaderWrapp
> er.initialize(LPCombineFileRecordReaderWrapper.java:38)
> at org.apache.hadoop.mapreduce.lib.input.CombineFileRecordReader.
> initialize(CombineFileRecordReader.java:63)
> at org.apache.spark.rdd.NewHadoopRDD$$anon$1.<init>(
> NewHadoopRDD.scala:168)
> at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:133)
> at org.apache.spark.rdd.NewHadoopRDD.compute(NewHadoopRDD.scala:65)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(
> MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(
> MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
> at org.apache.spark.rdd.MapPartitionsRDD.compute(
> MapPartitionsRDD.scala:38)
> at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:306)
> at org.apache.spark.rdd.RDD.iterator(RDD.scala:270)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(
> ShuffleMapTask.scala:73)
> at org.apache.spark.scheduler.ShuffleMapTask.runTask(
> ShuffleMapTask.scala:41)
> at org.apache.spark.scheduler.Task.run(Task.scala:89)
> at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:242)
> at java.util.concurrent.ThreadPoolExecutor.runWorker(
> ThreadPoolExecutor.java:1145)
> at java.util.concurrent.ThreadPoolExecutor$Worker.run(
> ThreadPoolExecutor.java:615)
> at java.lang.Thread.run(Thread.java:745)
> Driver stacktrace:
>
>
>
> I see the LZO at GPextras:
>
> ll
> total 104
> -rw-r--r-- 1 cloudera-scm cloudera-scm 35308 Oct  4  2017
> COPYING.hadoop-lzo
> -rw-r--r-- 1 cloudera-scm cloudera-scm 62268 Oct  4  2017
> hadoop-lzo-0.4.15-cdh5.13.0.jar
> lrwxrwxrwx 1 cloudera-scm cloudera-scm    31 May  3 07:23 hadoop-lzo.jar
> -> hadoop-lzo-0.4.15-cdh5.13.0.jar
> drwxr-xr-x 2 cloudera-scm cloudera-scm  4096 Oct  4  2017 native
>
>
>
>
> --
> Take Care
> Fawze Abujaber
>



-- 
Take Care
Fawze Abujaber

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