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From "Chris Mattmann" <mattm...@apache.org>
Subject Re: Review Request 32291: ISATab parsers (preliminary version)
Date Sat, 28 Mar 2015 21:36:19 GMT

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This is an automatically generated e-mail. To reply, visit:
https://reviews.apache.org/r/32291/#review78159
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Ship it!


I have ran this in production and it works awesome! Thanks Giuseppe!

- Chris Mattmann


On March 23, 2015, 5:04 p.m., Giuseppe Totaro wrote:
> 
> -----------------------------------------------------------
> This is an automatically generated e-mail. To reply, visit:
> https://reviews.apache.org/r/32291/
> -----------------------------------------------------------
> 
> (Updated March 23, 2015, 5:04 p.m.)
> 
> 
> Review request for tika and Chris Mattmann.
> 
> 
> Bugs: TIKA-1580
>     https://issues.apache.org/jira/browse/TIKA-1580
> 
> 
> Repository: tika
> 
> 
> Description
> -------
> 
> ISATab parsers. This preliminary solution provides three parsers, one for each ISA-Tab
filetype (Investigation, Study, Assay).
> 
> 
> Diffs
> -----
> 
>   trunk/tika-bundle/pom.xml 1668683 
>   trunk/tika-core/src/main/resources/org/apache/tika/mime/tika-mimetypes.xml 1668683

>   trunk/tika-parsers/pom.xml 1668683 
>   trunk/tika-parsers/src/main/java/org/apache/tika/parser/isatab/ISATabAssayParser.java
PRE-CREATION 
>   trunk/tika-parsers/src/main/java/org/apache/tika/parser/isatab/ISATabInvestigationParser.java
PRE-CREATION 
>   trunk/tika-parsers/src/main/java/org/apache/tika/parser/isatab/ISATabStudyParser.java
PRE-CREATION 
>   trunk/tika-parsers/src/main/resources/META-INF/services/org.apache.tika.parser.Parser
1668683 
>   trunk/tika-parsers/src/test/java/org/apache/tika/parser/isatab/ISATabAssayParserTest.java
PRE-CREATION 
>   trunk/tika-parsers/src/test/java/org/apache/tika/parser/isatab/ISATabInvestigationParserTest.java
PRE-CREATION 
>   trunk/tika-parsers/src/test/java/org/apache/tika/parser/isatab/ISATabStudyParserTest.java
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/a_bii-s-2_metabolite
profiling_NMR spectroscopy.txt PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/a_metabolome.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/a_microarray.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/a_proteome.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/a_transcriptome.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/i_investigation.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/s_BII-S-1.txt
PRE-CREATION 
>   trunk/tika-parsers/src/test/resources/test-documents/testISATab_BII-I-1/s_BII-S-2.txt
PRE-CREATION 
> 
> Diff: https://reviews.apache.org/r/32291/diff/
> 
> 
> Testing
> -------
> 
> Tested on sample ISA-Tab files downloaded from http://www.isa-tools.org/format/examples/.
> 
> 
> Thanks,
> 
> Giuseppe Totaro
> 
>


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