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From Peter Klügl (JIRA) <...@uima.apache.org>
Subject [jira] [Resolved] (UIMA-4480) Cannot declar new type in Java code to apply Ruta rules
Date Mon, 10 Aug 2015 18:35:46 GMT

     [ https://issues.apache.org/jira/browse/UIMA-4480?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Peter Klügl resolved UIMA-4480.
-------------------------------
    Resolution: Fixed

(probably) fixed / answered question

> Cannot declar new type in Java code to apply Ruta rules
> -------------------------------------------------------
>
>                 Key: UIMA-4480
>                 URL: https://issues.apache.org/jira/browse/UIMA-4480
>             Project: UIMA
>          Issue Type: Bug
>          Components: ruta
>    Affects Versions: 2.2.1ruta
>            Reporter: Min Jiang
>            Assignee: Peter Klügl
>             Fix For: 2.3.1ruta
>
>
> I used Java code to apply UIMA Ruta rules, but with declare statement, ruta cannot recognize
the new created annotation type.
> Here is the code I used:
> String rutaStr2 = "DECLARE person; W{REGEXP(\"Patient\") -> MARK(person)};";
> Ruta.apply( aJCas.getCas(), rutaStr2 );
> The error is like:
> Jun 24, 2015 3:01:07 PM org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl
callAnalysisComponentProcess(417)
> SEVERE: Exception occurred
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing
failed.    
> 	at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
> 	at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
> 	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> 	at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
> 	at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
> 	at edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
> Caused by: java.lang.IllegalArgumentException: Not able to resolve type: animal
> 	at org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
> 	at org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
> 	at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
> 	at org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
> 	at org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
> 	at org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
> 	at org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
> 	at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
> 	at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
> 	at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
> 	... 7 more
> org.apache.uima.analysis_engine.AnalysisEngineProcessException: Annotator processing
failed.    
> 	at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:496)
> 	at org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:385)
> 	at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:309)
> 	at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
> 	at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:75)
> 	at org.apache.uima.ruta.engine.Ruta.apply(Ruta.java:83)
> 	at edu.uth.clamp.nlp.attr.ast.LinearAssertion.main(LinearAssertion.java:610)
> Caused by: java.lang.IllegalArgumentException: Not able to resolve type: animal
> 	at org.apache.uima.ruta.expression.type.SimpleTypeExpression.getType(SimpleTypeExpression.java:47)
> 	at org.apache.uima.ruta.action.AbstractMarkAction.createAnnotation(AbstractMarkAction.java:42)
> 	at org.apache.uima.ruta.action.MarkAction.execute(MarkAction.java:57)
> 	at org.apache.uima.ruta.rule.AbstractRuleElement.apply(AbstractRuleElement.java:130)
> 	at org.apache.uima.ruta.rule.RuleElementCaretaker.applyRuleElements(RuleElementCaretaker.java:111)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.applyRuleElements(ComposedRuleElement.java:559)
> 	at org.apache.uima.ruta.rule.AbstractRuleElement.doneMatching(AbstractRuleElement.java:84)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.fallback(ComposedRuleElement.java:480)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.fallbackContinue(ComposedRuleElement.java:384)
> 	at org.apache.uima.ruta.rule.RutaRuleElement.startMatch(RutaRuleElement.java:106)
> 	at org.apache.uima.ruta.rule.ComposedRuleElement.startMatch(ComposedRuleElement.java:73)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:47)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:40)
> 	at org.apache.uima.ruta.rule.RutaRule.apply(RutaRule.java:29)
> 	at org.apache.uima.ruta.RutaScriptBlock.apply(RutaScriptBlock.java:63)
> 	at org.apache.uima.ruta.RutaModule.apply(RutaModule.java:48)
> 	at org.apache.uima.ruta.engine.RutaEngine.process(RutaEngine.java:494)
> 	... 7 more



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