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From Natalia Shilenkova <nshilenk...@gmail.com>
Subject Re: No inline metadata reader available for version 109
Date Wed, 26 Jan 2011 03:33:42 GMT

On Jan 25, 2011, at 2:19 PM, Andre Juffer wrote:

> On 01/25/2011 09:14 PM, Natalia Shilenkova wrote:
>>>>> What would be the appropriate course of action to resolve this issue.
>>>>> there a way to extract the binary file in another way (not XML-based)
>>>>> that I manually delete the affected entry.
>>>>> XIndice version: v1.1b5-dev
>>>> Andre,
>>>> Are you trying to retrieve the corrupted document from the database or
>>>> just delete it? If it is the latter, then the simplest way, I think, is to
>>>> create new empty collection and load the existing documents.
>>> Yes, I thought already that is probably the way to go. It will be
>>> cumbersome.
>> Yes, it can take a while, depending on the size of a collection... I
>> think it may be possible to delete the corrupted entry using low-level
>> API that doesn't try to interpret the data, but I would strongly
>> recommend rebuilding the collection anyway, just to be sure that there
>> are no hidden problems.
> On the other hand, the way I've set things up is that there are related XMl documents
in the database with names (ids) likes 23-0.0, 23-0.1, 23-0.2 etc So, I can retrieve groups
of related XML documents with one command. If I can insert them also as groups (collection)
then it going to be a lot easier.
> I am pretty sure that I going to rebuild the collection. Looks more straightforward.
It could be accomplished with a simple script.

There is also Xindice command-line tool that has import and export options. If my memory serves
me right, import reads files in a directory and creates entries in the collection with ids
that correspond to file names, but I don't think it supports binary data. Would something
like import make the migration easier? 


> Thanks,
> Andre
> -- 
> Andre H. Juffer              | Phone: +358-8-553 1161
> Biocenter Oulu and           | Fax: +358-8-553-1141
> Department of Biochemistry   | Email: andre.juffer@oulu.fi
> University of Oulu, Finland  | WWW: www.biochem.oulu.fi/Biocomputing/
> StruBioCat                   | WWW: www.strubiocat.oulu.fi
> NordProt                     | WWW: www.nordprot.org
> Triacle Biocomputing         | WWW: www.triacle-bc.com

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