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From seanfi...@apache.org
Subject svn commit: r1872005 - /ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper
Date Thu, 26 Dec 2019 16:36:52 GMT
Author: seanfinan
Date: Thu Dec 26 16:36:52 2019
New Revision: 1872005

URL: http://svn.apache.org/viewvc?rev=1872005&view=rev
Log:
revert

Modified:
    ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper

Modified: ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper
URL: http://svn.apache.org/viewvc/ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper?rev=1872005&r1=1872004&r2=1872005&view=diff
==============================================================================
--- ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper
(original)
+++ ctakes/trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/pipeline/FullPipeline.piper
Thu Dec 26 16:36:52 2019
@@ -1,83 +1,34 @@
-//reader LinesFromFileCollectionReader InputFileName=C:/Spiffy/ctakes_trunk/ctakes-examples-res/src/main/resources/org/apache/ctakes/examples/notes/right_knee_arthroscopy
 
-set SectionsBsv=org/apache/ctakes/core/sections/SameLineSectionRegex.bsv
+// Advanced Tokenization: Regex sectionization, BIO Sentence Detector (lumper), Paragraphs,
Lists
+load FullTokenizerPipeline
+// OR use the standard tokenizer pipeline:
+//load DefaultTokenizerPipeline
 
-//load DefaultFastPipeline
-//load SectionedFastPipeline
-
-//// Use section headers that can be on the same line as the section's body
-//set SectionsBsv=org/apache/ctakes/core/sections/SameLineSectionRegex.bsv
-//// Advanced Tokenization: Regex sectionization, BIO Sentence Detector (lumper), Paragraphs,
Lists
-////load FullTokenizerPipeline
-//// OR use the standard tokenizer pipeline:
-load DefaultTokenizerPipeline
-//
-//// Always need these ...
+// Always need these ...
 add ContextDependentTokenizerAnnotator
 add POSTagger
-//
-//// Chunkers
+
+// Chunkers
 load ChunkerSubPipe
-//
-//// Default fast dictionary lookup
-////set minimumSpan=2
+
+// Default fast dictionary lookup
+set minimumSpan=2
 load DictionarySubPipe
-//
-//// Cleartk Entity Attributes (negation, uncertainty, etc.)
+
+// Cleartk Entity Attributes (negation, uncertainty, etc.)
 load AttributeCleartkSubPipe
-////load WindowedAttributeCleartkSubPipe
-//
-//// Entity Relations (degree/severity, anatomical location)
-//load RelationSubPipe
-//
-//// Temporal (event, time, dtr, tlink)
-load TemporalSubPipe
 
-//// Entity Relations (degree/severity, anatomical location)
+// Entity Relations (degree/severity, anatomical location)
 load RelationSubPipe
 
-//
-//// Coreferences (e.g. patient = he)
-load CorefSubPipe
-//
-//// Write Html files
-add pretty.html.HtmlTextWriter SubDirectory=HTML
-//
-//// Write Fast Health Interoperability Resources (FHIR) json files.  fhir.org
-//package org.apache.ctakes.fhir.cc
-//add FhirJsonFileWriter SubDirectory=FHIR
-////
-//////  JDBC driver ClassName.
-////set DbDriver=com.ibm.db2.jcc.DB2Driver
-////
-//////  JDBC URL that specifies database network location and name.
-////set DbUrl=jdbc:db2://localhost:0000/changeme
-////
-//////  Username for database authentication.
-////set DbUser=changeme
-////
-//////  Password for database authentication.
-////set DbPass=changeme
-////
-////// Name of the Observation_Fact table for writing output.
-////set FactOutputTable=changeme
-////add jdbc.i2b2.I2b2JdbcWriter
-//
-//// XMI output
-//writeXmis
-//
-//// HTML output
-writeHtml
-//
-//// Write plaintext copy of note text with cui, semantic group, POS.  Relations are listed.
-add pretty.plaintext.PrettyTextWriterFit SubDirectory=TEXT
-
-// Write plaintext copy of note sentences with entities and relations listed.
-add property.plaintext.PropertyTextWriterFit SubDirectory=PROP
+// Temporal (event, time, dtr, tlink)
+load TemporalSubPipe
 
-//add SimpleMedDatesFinder SectionList=org/apache/ctakes/temporal/ae/section/DefaultMedSections.txt
LookupWindow=org.apache.ctakes.typesystem.type.textspan.Segment
+// Coreferences (e.g. patient = he)
+load CorefSubPipe
 
-//add SimpleMedDatesPrinter
+// Html output
+add pretty.html.HtmlTextWriter
 
-// Log run time stats and completion
-addLast util.FinishedLogger
+// XMI output
+//writeXmis



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