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From Renato Javier Marroquín Mogrovejo (JIRA) <j...@apache.org>
Subject [jira] [Commented] (GORA-24) Throwing EOFException with MEDIUMBLOB type for inlinks column
Date Wed, 02 Jan 2013 05:18:12 GMT

    [ https://issues.apache.org/jira/browse/GORA-24?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel&focusedCommentId=13542002#comment-13542002

Renato Javier Marroquín Mogrovejo commented on GORA-24:

Hi Nathan,
I wanted to fix this, but after reading a little bit about this, and reviewing the code, I
think this is not a bug within Gora. Maybe we can provide better error messages, the problem
here is that the Nutch's MySQL mapping file  is not right for most cases.

  <class name="org.apache.gora.examples.generated.WebPage" keyClass="java.lang.String"
    <primarykey column="id" length="128"/>
    <field name="url" column="url" length="128" primarykey="true"/>
    <field name="content" column="content"/>
    <field name="parsedContent" column="parsedContent"/>
    <field name="outlinks" column="outlinks"/>
    <field name="metadata" column="metadata"/>

This is what it looks like within Gora, should we change it?

> Throwing EOFException with MEDIUMBLOB type for inlinks column
> -------------------------------------------------------------
>                 Key: GORA-24
>                 URL: https://issues.apache.org/jira/browse/GORA-24
>             Project: Apache Gora
>          Issue Type: Bug
>          Components: storage-sql
>         Environment: MySQL
>            Reporter: Alexis
>             Fix For: 0.3
> I had an exception with DbUpdaterJob complaining that inlinks column of type BLOB in
webpage table was not big enough to store all the incoming links. So I changed the column
definition in gora-sql-mapping.xml from BLOB to MEDIUMBLOB:
>     <field name="inlinks" column="inlinks" jdbc-type="MEDIUMBLOB"/>
> Now I systematically get an exception in the update step:
> java.io.IOException: java.sql.BatchUpdateException: Error reading from InputStream java.io.EOFException
> 	at org.apache.gora.sql.store.SqlStore.flush(SqlStore.java:341)
> 	at org.apache.gora.sql.store.SqlStore.close(SqlStore.java:185)
> 	at org.apache.gora.mapreduce.GoraRecordWriter.close(GoraRecordWriter.java:55)
> 	at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:567)
> 	at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:408)
> 	at org.apache.hadoop.mapred.LocalJobRunner$Job.run(LocalJobRunner.java:216)
> Caused by: java.sql.BatchUpdateException: Error reading from InputStream java.io.EOFException
> 	at com.mysql.jdbc.PreparedStatement.executeBatchSerially(PreparedStatement.java:2020)
> 	at com.mysql.jdbc.PreparedStatement.executeBatch(PreparedStatement.java:1451)
> 	at org.apache.gora.sql.store.SqlStore.flush(SqlStore.java:329)
> 	... 5 more

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