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From "Yanbo Liang (JIRA)" <j...@apache.org>
Subject [jira] [Resolved] (SPARK-19158) ml.R example fails in yarn-cluster mode due to lacks of e1071 package
Date Thu, 12 Jan 2017 09:06:51 GMT

     [ https://issues.apache.org/jira/browse/SPARK-19158?page=com.atlassian.jira.plugin.system.issuetabpanels:all-tabpanel
]

Yanbo Liang resolved SPARK-19158.
---------------------------------
       Resolution: Fixed
    Fix Version/s: 2.2.0
                   2.1.1

> ml.R example fails in yarn-cluster mode due to lacks of e1071 package
> ---------------------------------------------------------------------
>
>                 Key: SPARK-19158
>                 URL: https://issues.apache.org/jira/browse/SPARK-19158
>             Project: Spark
>          Issue Type: Bug
>          Components: Examples
>            Reporter: Yesha Vora
>            Assignee: Yanbo Liang
>             Fix For: 2.1.1, 2.2.0
>
>
> ml.R application fails in spark2 with yarn-cluster mode.
> {code}
> spark-submit --master yarn-cluster examples/src/main/r/ml/ml.R {code}
> {code:title=application log}
> 17/01/03 04:35:30 INFO MemoryStore: Block broadcast_88 stored as values in memory (estimated
size 6.8 KB, free 407.6 MB)
> 17/01/03 04:35:30 INFO BufferedStreamThread: Error : requireNamespace("e1071", quietly
= TRUE) is not TRUE
> 17/01/03 04:35:30 ERROR Executor: Exception in task 0.0 in stage 65.0 (TID 65)
> org.apache.spark.SparkException: R computation failed with
>  Error : requireNamespace("e1071", quietly = TRUE) is not TRUE
> 	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:108)
> 	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:50)
> 	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
> 	at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
> 	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
> 	at org.apache.spark.scheduler.Task.run(Task.scala:99)
> 	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282)
> 	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> 	at java.lang.Thread.run(Thread.java:745)
> 17/01/03 04:35:30 INFO CoarseGrainedExecutorBackend: Got assigned task 68
> 17/01/03 04:35:30 INFO Executor: Running task 3.0 in stage 65.0 (TID 68)
> 17/01/03 04:35:30 INFO BufferedStreamThread: Error : requireNamespace("e1071", quietly
= TRUE) is not TRUE
> 17/01/03 04:35:30 ERROR Executor: Exception in task 3.0 in stage 65.0 (TID 68)
> org.apache.spark.SparkException: R computation failed with
>  Error : requireNamespace("e1071", quietly = TRUE) is not TRUE
> Error : requireNamespace("e1071", quietly = TRUE) is not TRUE
> 	at org.apache.spark.api.r.RRunner.compute(RRunner.scala:108)
> 	at org.apache.spark.api.r.BaseRRDD.compute(RRDD.scala:50)
> 	at org.apache.spark.rdd.RDD.computeOrReadCheckpoint(RDD.scala:323)
> 	at org.apache.spark.rdd.RDD.iterator(RDD.scala:287)
> 	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87)
> 	at org.apache.spark.scheduler.Task.run(Task.scala:99)
> 	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282)
> 	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
> 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
> 	at java.lang.Thread.run(Thread.java:745)
> 17/01/03 04:35:30 INFO CoarseGrainedExecutorBackend: Got assigned task 70
> {code}



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